miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54843_vvi-miR319b:pmrd
Length = 194
Score = 385 bits (194), Expect = e-108
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 1 tgtggaagaaggagctctctttagtccagtccgagacagcttcaaggctgatacgtggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtggaagaaggagctctctttagtccagtccgagacagcttcaaggctgatacgtggct 60
Query: 61 gctgactcgttgcttcaagaactcatcacataggcctggaaaagatggatggttttttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgactcgttgcttcaagaactcatcacataggcctggaaaagatggatggttttttga 120
Query: 121 tccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaagggagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaagggagctc 180
Query: 181 ccttgtattccaca 194
||||||||||||||
Sbjct: 181 ccttgtattccaca 194
>48687_ltu-miR319:pmrd
Length = 167
Score = 73.8 bits (37), Expect = 4e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 114 tttttgatccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaag 173
|||||||||||||||||| ||||| | ||| ||| || ||||| |||||||||||||||
Sbjct: 99 tttttgatccaacgatgcgggagccgtgtttggttctgtctgtctcgtcttggactgaag 158
Query: 174 ggagctccc 182
|||||||||
Sbjct: 159 ggagctccc 167
>54583_smo-miR319:pmrd
Length = 215
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctcccttgt 186
|||||||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcccttgt 209
>54846_vvi-miR319f:pmrd
Length = 193
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctccctt 183
>54844_vvi-miR319c:pmrd
Length = 182
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctccctt 172
>51710_ptc-miR319d:pmrd
Length = 193
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctccctt 186
>51709_ptc-miR319c:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctccctt 189
>51707_ptc-miR319a:pmrd
Length = 188
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctt 181
>48573_gma-miR319b:pmrd
Length = 208
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctccctt 191
>48572_gma-miR319a:pmrd
Length = 207
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccctt 190
>51708_ptc-miR319b:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccctt 184
||||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctccctt 178
>51390_ppt-miR319e:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tcttggactgaagggagctccc 182
||||||||||||||||||||||
Sbjct: 146 tcttggactgaagggagctccc 167
>51389_ppt-miR319d:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tcttggactgaagggagctccc 182
||||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctccc 165
>51388_ppt-miR319d:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tcttggactgaagggagctccc 182
||||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctccc 165
>51387_ppt-miR319d:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tcttggactgaagggagctccc 182
||||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctccc 165
>51386_ppt-miR319c:pmrd
Length = 189
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tcttggactgaagggagctccc 182
||||||||||||||||||||||
Sbjct: 153 tcttggactgaagggagctccc 174
>48478_ech-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccctt 184
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctt 182
>48429_crb-miR159:pmrd
Length = 194
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccctt 184
||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctccctt 184
>46993_ath-miR319b:pmrd
Length = 172
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccct 183
||||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctccct 172
>46884_aqc-miR319:pmrd
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccct 183
||||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccct 175
>54754_tar-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>54686_tae-miR319a:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccc 182
|||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctccc 196
>54670_svi-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>54391_rin-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>51385_ppt-miR319b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tcttggactgaagggagctcc 181
|||||||||||||||||||||
Sbjct: 139 tcttggactgaagggagctcc 159
>51384_ppt-miR319a:pmrd
Length = 169
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tcttggactgaagggagctcc 181
|||||||||||||||||||||
Sbjct: 147 tcttggactgaagggagctcc 167
>48788_nof-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>48694_mma-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>48476_dso-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccct 182
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccct 182
>48415_bvl-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 37 ttggactgaagggagctccct 17
>46992_ath-miR319a:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccct 174
>46860_ape-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccct 183
|||||||||||||||||||||
Sbjct: 160 ttggactgaagggagctccct 180
>54847_vvi-miR319g:pmrd
Length = 222
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccc 182
||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccc 211
>54380_pvu-miR319c:pmrd
Length = 734
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctcc 181
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctcc 181
||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcc 194
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctcc 181
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctcc 181
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
