miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54847_vvi-miR319g:pmrd
Length = 222
Score = 440 bits (222), Expect = e-124
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 1 gaacagctgaagagctccttttagtccaataaagagggctgaggggcggccagagctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaacagctgaagagctccttttagtccaataaagagggctgaggggcggccagagctgcc 60
Query: 61 atctcatgcacttggctatgcttattcttttctcaatcaattcggttcgagtatggctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctcatgcacttggctatgcttattcttttctcaatcaattcggttcgagtatggctgt 120
Query: 121 ggagtgacaaatgctaagtttagcctgatgcatgacatgggagcaactcctccgcacgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagtgacaaatgctaagtttagcctgatgcatgacatgggagcaactcctccgcacgct 180
Query: 181 ttgcccactcattggactgaagggagctcccagggcagatct 222
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgcccactcattggactgaagggagctcccagggcagatct 222
>51714_ptc-miR319h:pmrd
Length = 195
Score = 81.8 bits (41), Expect = 2e-16
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 14 gctccttttagtccaataaagagggctgaggggcggccagagctgccatctcatgca 70
||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct: 17 gctccttttagtccaataaggagggctgagaagcggctagagctgccatctcatgca 73
Score = 52.0 bits (26), Expect = 2e-07
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 158 tgggagcaactcct-ccgcacgctttgcccactcattggactgaagggagctcc 210
|||||||||||||| ||||| |||||| | | |||||||||||||||||||||
Sbjct: 130 tgggagcaactccttccgcatgctttgttcgcccattggactgaagggagctcc 183
>52398_ptc-miRf10576-akr:pmrd
Length = 192
Score = 73.8 bits (37), Expect = 5e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 14 gctccttttagtccaataaagagggctgaggggcggccagagctgccatctcatgca 70
|||||||||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct: 15 gctccttttagtccaatacggagggctgagaagcggctagagctgccatctcatgca 71
Score = 60.0 bits (30), Expect = 8e-10
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 158 tgggagcaactcct-ccgcacgctttgcccactcattggactgaagggagctcc 210
|||||||||||||| ||||| ||||||| | | |||||||||||||||||||||
Sbjct: 129 tgggagcaactccttccgcatgctttgctcgcccattggactgaagggagctcc 182
>51711_ptc-miR319e:pmrd
Length = 192
Score = 73.8 bits (37), Expect = 5e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 14 gctccttttagtccaataaagagggctgaggggcggccagagctgccatctcatgca 70
|||||||||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct: 15 gctccttttagtccaatacggagggctgagaagcggctagagctgccatctcatgca 71
Score = 60.0 bits (30), Expect = 8e-10
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 158 tgggagcaactcct-ccgcacgctttgcccactcattggactgaagggagctcc 210
|||||||||||||| ||||| ||||||| | | |||||||||||||||||||||
Sbjct: 129 tgggagcaactccttccgcatgctttgctcgcccattggactgaagggagctcc 182
>51708_ptc-miR319b:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 189 tcattggactgaagggagctccc 211
|||||||||||||||||||||||
Sbjct: 154 tcattggactgaagggagctccc 176
>54754_tar-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>54670_svi-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>54391_rin-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>51390_ppt-miR319e:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccca 212
|||||||||||||||||||||
Sbjct: 148 ttggactgaagggagctccca 168
>51386_ppt-miR319c:pmrd
Length = 189
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccca 212
|||||||||||||||||||||
Sbjct: 155 ttggactgaagggagctccca 175
>48788_nof-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>48694_mma-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>48478_ech-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>48476_dso-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>48429_crb-miR159:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 162 attggactgaagggagctccc 182
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 161 attggactgaagggagctccc 181
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 161 attggactgaagggagctccc 181
>48415_bvl-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 38 attggactgaagggagctccc 18
>46992_ath-miR319a:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 153 attggactgaagggagctccc 173
>46860_ape-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 160 attggactgaagggagctccc 180
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 attggactgaagggagctccc 211
|||||||||||||||||||||
Sbjct: 159 attggactgaagggagctccc 179
>54846_vvi-miR319f:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccc 181
>54844_vvi-miR319c:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 151 ttggactgaagggagctccc 170
>54843_vvi-miR319b:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctccc 182
>54686_tae-miR319a:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 177 ttggactgaagggagctccc 196
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 186 ttggactgaagggagctccc 205
>51710_ptc-miR319d:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctccc 184
>51709_ptc-miR319c:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 168 ttggactgaagggagctccc 187
>51707_ptc-miR319a:pmrd
Length = 188
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 160 ttggactgaagggagctccc 179
>51389_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 146 ttggactgaagggagctccc 165
>51388_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 146 ttggactgaagggagctccc 165
>51387_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 146 ttggactgaagggagctccc 165
>48687_ltu-miR319:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 148 ttggactgaagggagctccc 167
>48573_gma-miR319b:pmrd
Length = 208
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 170 ttggactgaagggagctccc 189
>48572_gma-miR319a:pmrd
Length = 207
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 169 ttggactgaagggagctccc 188
>46993_ath-miR319b:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 152 ttggactgaagggagctccc 171
>46884_aqc-miR319:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctccc 211
||||||||||||||||||||
Sbjct: 155 ttggactgaagggagctccc 174
