miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54848_vvi-miR390:pmrd
Length = 140
Score = 278 bits (140), Expect = 1e-75
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatgagccatgatgaaaatgattgttgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatgagccatgatgaaaatgattgttgagt 60
Query: 61 tgaaaattttttctagcttgttttttgggtcatcattttgtgtgtgtggcgctatctatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgaaaattttttctagcttgttttttgggtcatcattttgtgtgtgtggcgctatctatc 120
Query: 121 ctgagtttcacgggttcttc 140
||||||||||||||||||||
Sbjct: 121 ctgagtttcacgggttcttc 140
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatgagc 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 4 agaatctgttaagctcaggagggatagcgccatgagc 40
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gtggcgctatctatcctgagtt 127
||||||||||||||||||||||
Sbjct: 92 gtggcgctatctatcctgagtt 113
>51716_ptc-miR390a:pmrd
Length = 119
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatgagc 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatgagc 37
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gtggcgctatctatcctgagtt 127
||||||||||||||||||||||
Sbjct: 89 gtggcgctatctatcctgagtt 110
>51718_ptc-miR390c:pmrd
Length = 123
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 4 atctgttaagctcaggagggatagcgccatgagc 37
||||||||||||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatgagc 37
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gtggcgctatctatcctgagtt 127
||||||||||||||||||||||
Sbjct: 93 gtggcgctatctatcctgagtt 114
>48500_ghr-miR390c:pmrd
Length = 114
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>48499_ghr-miR390b:pmrd
Length = 132
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||||||||||
Sbjct: 8 agaatctgttaagctcaggagggatagcgccatg 41
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 109 gcgctatctatcctgagtttcacgggttcttc 140
|||||||| ||||||||||||| ||||||||
Sbjct: 94 gcgctatccatcctgagtttcatcggttcttc 125
>48498_ghr-miR390a:pmrd
Length = 124
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatg 38
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 109 gcgctatctatcctgagtttcacgggttcttc 140
|||||||| ||||||||||||| ||||||||
Sbjct: 91 gcgctatccatcctgagtttcatcggttcttc 122
>51719_ptc-miR390d:pmrd
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgcc 31
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
>51717_ptc-miR390b:pmrd
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgcc 31
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 106 gtggcgctatctatcctgagtttca 130
||||||||||| |||||||||||||
Sbjct: 76 gtggcgctatccatcctgagtttca 100
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatga 35
||||||||| |||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagcgccatga 42
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 107 tggcgctatctatcctgagtttca 130
|||||||||| |||||||||||||
Sbjct: 67 tggcgctatccatcctgagtttca 90
>46995_ath-miR390a:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatga 35
||||||||| |||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagcgccatga 42
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 107 tggcgctatctatcctgagtttca 130
|||||||||| |||||||||||||
Sbjct: 67 tggcgctatccatcctgagtttca 90
>48371_bna-miR390b:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccat 33
||||||||| |||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagcgccat 40
>48372_bna-miR390c:pmrd
Length = 128
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ctgttaagctcaggagggatagcgccatga 35
|||| |||||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccatga 47
>48370_bna-miR390a:pmrd
Length = 144
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ctgttaagctcaggagggatagcgccatg 34
|||| ||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccatga 35
|||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatga 25
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gttaagctcaggagggatagcgcc 31
||||||||||||||||||||||||
Sbjct: 1 gttaagctcaggagggatagcgcc 24
>48575_gma-miR390b:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagc 28
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>46996_ath-miR390b:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccatg 34
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccat 33
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccat 33
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 agctcaggagggatagcgcc 31
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 agctcaggagggatagcgcc 31
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
