miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54850_vvi-miR393b:pmrd
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 ggaggaggcatccaaagggatcgcattgatcccaaactctccatgtctttggatcatgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaggaggcatccaaagggatcgcattgatcccaaactctccatgtctttggatcatgct 60
Query: 61 atccctttggattcctcctttgg 83
|||||||||||||||||||||||
Sbjct: 61 atccctttggattcctcctttgg 83
>52949_ptc-miRf11127-akr:pmrd
Length = 93
Score = 79.8 bits (40), Expect = 3e-16
Identities = 77/88 (87%), Gaps = 6/88 (6%)
Strand = Plus / Plus
Query: 2 gaggaggcatccaaagggatcgcattgatcccaaac-tct-----ccatgtctttggatc 55
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatcccaagtgtctgtcccccataattttggatc 64
Query: 56 atgctatccctttggattcctcctttgg 83
||||||||||||||||||||||||||||
Sbjct: 65 atgctatccctttggattcctcctttgg 92
>52948_ptc-miRf11126-akr:pmrd
Length = 93
Score = 79.8 bits (40), Expect = 3e-16
Identities = 77/88 (87%), Gaps = 6/88 (6%)
Strand = Plus / Plus
Query: 2 gaggaggcatccaaagggatcgcattgatcccaaac-tct-----ccatgtctttggatc 55
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatcccaagtgtctgtcccccataattttggatc 64
Query: 56 atgctatccctttggattcctcctttgg 83
||||||||||||||||||||||||||||
Sbjct: 65 atgctatccctttggattcctcctttgg 92
>51950_ptc-miRf10128-akr:pmrd
Length = 99
Score = 79.8 bits (40), Expect = 3e-16
Identities = 77/88 (87%), Gaps = 6/88 (6%)
Strand = Plus / Plus
Query: 2 gaggaggcatccaaagggatcgcattgatcccaaac-tct-----ccatgtctttggatc 55
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct: 8 gaggaggcatccaaagggatcgcattgatcccaagtgtctgtcccccataattttggatc 67
Query: 56 atgctatccctttggattcctcctttgg 83
||||||||||||||||||||||||||||
Sbjct: 68 atgctatccctttggattcctcctttgg 95
>53841_ptc-miRf12019-akr:pmrd
Length = 98
Score = 77.8 bits (39), Expect = 1e-15
Identities = 75/87 (86%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 2 gaggaggcatccaaagggatcgcattgatcccaaa-----ctctccatgtctttggatca 56
|||||||||||||||||||||||||||||||| | || |||| |||||||||
Sbjct: 8 gaggaggcatccaaagggatcgcattgatcccgagtgtccctggccataattttggatca 67
Query: 57 tgctatccctttggattcctcctttgg 83
|||||||||||||||||||||||||||
Sbjct: 68 tgctatccctttggattcctcctttgg 94
>53840_ptc-miRf12018-akr:pmrd
Length = 92
Score = 77.8 bits (39), Expect = 1e-15
Identities = 75/87 (86%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 2 gaggaggcatccaaagggatcgcattgatcccaaa-----ctctccatgtctttggatca 56
|||||||||||||||||||||||||||||||| | || |||| |||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatcccgagtgtccctggccataattttggatca 64
Query: 57 tgctatccctttggattcctcctttgg 83
|||||||||||||||||||||||||||
Sbjct: 65 tgctatccctttggattcctcctttgg 91
>52374_ptc-miRf10552-akr:pmrd
Length = 92
Score = 77.8 bits (39), Expect = 1e-15
Identities = 75/87 (86%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 2 gaggaggcatccaaagggatcgcattgatcccaaa-----ctctccatgtctttggatca 56
|||||||||||||||||||||||||||||||| | || |||| |||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatcccgagtgtccctggccataattttggatca 64
Query: 57 tgctatccctttggattcctcctttgg 83
|||||||||||||||||||||||||||
Sbjct: 65 tgctatccctttggattcctcctttgg 91
>51972_ptc-miRf10150-akr:pmrd
Length = 98
Score = 77.8 bits (39), Expect = 1e-15
Identities = 75/87 (86%), Gaps = 5/87 (5%)
Strand = Plus / Minus
Query: 2 gaggaggcatccaaagggatcgcattgatcccaaa-----ctctccatgtctttggatca 56
|||||||||||||||||||||||||||||||| | || |||| |||||||||
Sbjct: 91 gaggaggcatccaaagggatcgcattgatcccgagtgtccctggccataattttggatca 32
Query: 57 tgctatccctttggattcctcctttgg 83
|||||||||||||||||||||||||||
Sbjct: 31 tgctatccctttggattcctcctttgg 5
>51720_ptc-miR393a:pmrd
Length = 85
Score = 71.9 bits (36), Expect = 7e-14
Identities = 73/84 (86%), Gaps = 6/84 (7%)
Strand = Plus / Plus
Query: 2 gaggaggcatccaaagggatcgcattgatcccaa---act---ctccatgtctttggatc 55
|||||||||||||||||||||||||||||||||| || | |||| ||||||||
Sbjct: 2 gaggaggcatccaaagggatcgcattgatcccaagtgtctgtcccccataattttggatc 61
Query: 56 atgctatccctttggattcctcct 79
||||||||||||||||||||||||
Sbjct: 62 atgctatccctttggattcctcct 85
>48576_gma-miR393:pmrd
Length = 120
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 ggaggaggcatccaaagggatcgcattgatcccaaa 36
||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaggaggcatccaaagggatcgcattgatcccaaa 36
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 51 ggatcatgctatccctttggattcctccttt 81
||||||||||||||||||||||| |||||||
Sbjct: 90 ggatcatgctatccctttggatttctccttt 120
>51721_ptc-miR393b:pmrd
Length = 84
Score = 69.9 bits (35), Expect = 3e-13
Identities = 71/83 (85%), Gaps = 5/83 (6%)
Strand = Plus / Plus
Query: 2 gaggaggcatccaaagggatcgcattgatcccaa-----actctccatgtctttggatca 56
|||||||||||||||||||||||||||||||| | || |||| |||||||||
Sbjct: 2 gaggaggcatccaaagggatcgcattgatcccgagtgtccctggccataattttggatca 61
Query: 57 tgctatccctttggattcctcct 79
|||||||||||||||||||||||
Sbjct: 62 tgctatccctttggattcctcct 84
>48731_mtr-miR393b:pmrd
Length = 119
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 6 aggcatccaaagggatcgcattgatcccaaa 36
|||||||||||||||||||||||||||||||
Sbjct: 1 aggcatccaaagggatcgcattgatcccaaa 31
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 ggatcatgctatccctttggattc 74
||||||||||||||||||||||||
Sbjct: 94 ggatcatgctatccctttggattc 117
>48730_mtr-miR393:pmrd
Length = 135
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 2 gaggaggcatccaaagggatcgcattgatcc 32
|||||||||||||||||||||||||||||||
Sbjct: 12 gaggaggcatccaaagggatcgcattgatcc 42
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 51 ggatcatgctatccctttggattcctccttt 81
||||||||| ||||||||||||| |||||||
Sbjct: 96 ggatcatgccatccctttggatttctccttt 126
>54470_sbi-miR393:pmrd
Length = 139
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ggaggaggcatccaaagggatcgcattgatcc 32
|||||| |||||||||||||||||||||||||
Sbjct: 11 ggaggaagcatccaaagggatcgcattgatcc 42
>48917_osa-miR393:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 gcatccaaagggatcgcattgatcc 32
|||||||||||||||||||||||||
Sbjct: 8 gcatccaaagggatcgcattgatcc 32
>47214_ath-miRf10114-akr:pmrd
Length = 131
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 48 tttggatcatgctatccctttggattcctcctt 80
|||||||||||||||| |||||||||| |||||
Sbjct: 99 tttggatcatgctatctctttggattcatcctt 131
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcc 32
|||||||||||||||||||||||
Sbjct: 9 atccaaagggatcgcattgatcc 31
>46998_ath-miR393a:pmrd
Length = 133
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 48 tttggatcatgctatccctttggattcctcctt 80
|||||||||||||||| |||||||||| |||||
Sbjct: 100 tttggatcatgctatctctttggattcatcctt 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcc 32
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>54849_vvi-miR393a:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatccca 34
||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatccca 34
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 ttggatcatgctatccctt 67
|||||||||||||||||||
Sbjct: 92 ttggatcatgctatccctt 110
>47287_ath-miRf10187-akr:pmrd
Length = 162
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcc 32
|||||||||||||||||||||||
Sbjct: 11 atccaaagggatcgcattgatcc 33
>46999_ath-miR393b:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcc 32
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>55062_zma-miR393f:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatcc 32
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55057_zma-miR393a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatcc 32
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>48373_bna-miR393:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatcc 32
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55063_zma-miR393g:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>55061_zma-miR393e:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 87 tccaaagggatcgcattgatc 67
>55060_zma-miR393d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 89 tccaaagggatcgcattgatc 69
>55059_zma-miR393c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55058_zma-miR393b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55056_zma-miR393:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>51723_ptc-miR393d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>51722_ptc-miR393c:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48919_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48918_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48501_ghr-miR393:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
