miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54852_vvi-miR394b:pmrd
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 acagagtttattggcattctgtccacctcccatctcttgaaaatctctcttttctctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagagtttattggcattctgtccacctcccatctcttgaaaatctctcttttctctctg 60
Query: 61 tggaggtgggcatactgccaaccaagctctgtt 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 tggaggtgggcatactgccaaccaagctctgtt 93
>51918_ptc-miRf10096-akr:pmrd
Length = 121
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 acagagtttattggcattctgtccacctcccatct 35
|||||||||||||||||||||||||||||| ||||
Sbjct: 15 acagagtttattggcattctgtccacctcctatct 49
>55065_zma-miR394b:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttggcattctgtccacctccc 31
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctccc 41
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 tggaggtgggcatactgccaa 81
|||||||||||||||||||||
Sbjct: 83 tggaggtgggcatactgccaa 103
>55064_zma-miR394a:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 tggaggtgggcatactgccaa 81
|||||||||||||||||||||
Sbjct: 87 tggaggtgggcatactgccaa 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttggcattctgtccacctcc 30
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>48920_osa-miR394:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 tggaggtgggcatactgccaa 81
|||||||||||||||||||||
Sbjct: 76 tggaggtgggcatactgccaa 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttggcattctgtccacctcc 30
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>54853_vvi-miR394c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttggcattctgtccacctcc 30
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>54851_vvi-miR394a:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttggcattctgtccacctcc 30
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>54472_sbi-miR394b:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttggcattctgtccacctcc 30
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>54471_sbi-miR394a:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttggcattctgtccacctcc 30
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>48502_ghr-miR394:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttggcattctgtccacctcc 30
||||||||||||||||||||
Sbjct: 1 ttggcattctgtccacctcc 20
>47001_ath-miR394b:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttggcattctgtccacctcc 30
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 ggaggtgggcatactgccaa 81
||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaa 107
>47000_ath-miR394a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttggcattctgtccacctcc 30
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
