miRNEST 2.0, an integrative microRNA resource :: BLAST
>54868_vvi-miR396a:pmrd
Length = 116
Score = 230 bits (116), Expect = 2e-61
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1 tcctgtcatgcttttccacagctttcttgaactacttttccatctacctgtttgatgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcctgtcatgcttttccacagctttcttgaactacttttccatctacctgtttgatgatc 60
Query: 61 ttcttcataaggagtgtgaaatagaagctcaagaaagctgtgggaggacatggcaa 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcttcataaggagtgtgaaatagaagctcaagaaagctgtgggaggacatggcaa 116
>51738_ptc-miR396e:pmrd
Length = 145
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaactacttt 38
||||||||||||||||||||||||||||| ||||
Sbjct: 2 gtcatgcttttccacagctttcttgaacttcttt 35
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 84 gaagctcaagaaagctgtgggaggacatgg 113
||||||||||||||||||||||| ||||||
Sbjct: 116 gaagctcaagaaagctgtgggagaacatgg 145
>54869_vvi-miR396b:pmrd
Length = 108
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tcctgtcatgcttttccacagctttcttgaact 33
||||| |||||||||||||||||||||||||||
Sbjct: 1 tcctgccatgcttttccacagctttcttgaact 33
>51737_ptc-miR396d:pmrd
Length = 154
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaact 33
|||||||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaact 30
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 gaagctcaagaaagctgtgggaggacatgg 113
||||||||||||||| ||||||| ||||||
Sbjct: 125 gaagctcaagaaagccgtgggagaacatgg 154
>48580_gma-miR396c:pmrd
Length = 117
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tcctgtcatgcttttccacagctttcttgaact 33
|||||| ||||||||||||||||||||||||||
Sbjct: 8 tcctgttatgcttttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaact 33
|||||||||||||||||||||||||||||
Sbjct: 12 gtcatgcttttccacagctttcttgaact 40
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 82 tagaagctcaagaaagctgtgggaggacatggcaa 116
||||||||||||||||||||||||| | |||||||
Sbjct: 84 tagaagctcaagaaagctgtgggagaatatggcaa 118
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 7 catgcttttccacagctttcttgaactacttt 38
||||||||||||||||||||||||||| ||||
Sbjct: 141 catgcttttccacagctttcttgaacttcttt 110
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 84 gaagctcaagaaagctgtgggaggacatg 112
||||||||||||||||||||||| |||||
Sbjct: 29 gaagctcaagaaagctgtgggagaacatg 1
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 7 catgcttttccacagctttcttgaactacttt 38
||||||||||||||||||||||||||| ||||
Sbjct: 141 catgcttttccacagctttcttgaacttcttt 110
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 84 gaagctcaagaaagctgtgggaggacatg 112
||||||||||||||||||||||| |||||
Sbjct: 29 gaagctcaagaaagctgtgggagaacatg 1
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 8 atgcttttccacagctttcttgaact 33
||||||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaact 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 84 gaagctcaagaaagctgtgggaggacat 111
||||||||||||||| ||||||| ||||
Sbjct: 28 gaagctcaagaaagccgtgggagaacat 1
>51564_pta-miR396:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 tgtcatgcttttccacagctttcttgaact 33
|||||| |||||||||||||||||||||||
Sbjct: 7 tgtcatacttttccacagctttcttgaact 36
>48748_mtr-miR396a:pmrd
Length = 93
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 tgcttttccacagctttcttgaactacttt 38
||||||||||||||||||||||||| ||||
Sbjct: 1 tgcttttccacagctttcttgaacttcttt 30
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 82 tagaagctcaagaaagctgtgggag 106
|||||||||||||||||||||||||
Sbjct: 65 tagaagctcaagaaagctgtgggag 89
>47009_ath-miR396b:pmrd
Length = 135
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaact 33
||||| |||||||||||||||||||||||
Sbjct: 2 gtcatacttttccacagctttcttgaact 30
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 gaagctcaagaaagctgtggga 105
||||||||||||||||||||||
Sbjct: 104 gaagctcaagaaagctgtggga 125
>54584_smo-miR396:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tcatgcttttccacagctttcttgaac 32
|||||||||||||| ||||||||||||
Sbjct: 3 tcatgcttttccacggctttcttgaac 29
>54487_sbi-miR396c:pmrd
Length = 162
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
||||| |||||||||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaact 40
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
||||||||||||| |||||||||||||
Sbjct: 1 catgcttttccacggctttcttgaact 27
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 catgcttttccacagctttcttgaact 33
|||| ||||||||||||||||||||||
Sbjct: 100 catgtttttccacagctttcttgaact 74
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaact 33
|||||||| |||||| |||||||||||||
Sbjct: 1 gtcatgctattccacggctttcttgaact 29
>51740_ptc-miR396g:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
||||||||||||| |||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
|||| ||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaact 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 6 tcatgcttttccacagctttcttgaact 33
||||||| |||||| |||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaact 75
>48947_osa-miR396c:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
||||| |||||||||||||||||||||
Sbjct: 4 catgcctttccacagctttcttgaact 30
>55078_zma-miR396g:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttccacagctttcttgaact 33
|||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttccacagctttcttgaact 33
|||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaact 22
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
