miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54870_vvi-miR396c:pmrd
Length = 108
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 ttctgtgatcttccacagctttcttgaactgttttggaagccttccacttccatgcaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttctgtgatcttccacagctttcttgaactgttttggaagccttccacttccatgcaatg 60
Query: 61 gaggagttcaaccaacagctcaggaaagttgtggaacattactgagag 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggagttcaaccaacagctcaggaaagttgtggaacattactgagag 108
>55073_zma-miR396b:pmrd
Length = 136
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 tgtgatcttccacagctttcttgaactg 31
||||||||||||||||||||||||||||
Sbjct: 14 tgtgatcttccacagctttcttgaactg 41
>54645_sof-miR396:pmrd
Length = 134
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 tgtgatcttccacagctttcttgaactg 31
||||||||||||||||||||||||||||
Sbjct: 14 tgtgatcttccacagctttcttgaactg 41
>54486_sbi-miR396b:pmrd
Length = 128
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 tgtgatcttccacagctttcttgaactg 31
||||||||||||||||||||||||||||
Sbjct: 14 tgtgatcttccacagctttcttgaactg 41
>48945_osa-miR396a:pmrd
Length = 154
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 tgtgatcttccacagctttcttgaactg 31
||||||||||||||||||||||||||||
Sbjct: 4 tgtgatcttccacagctttcttgaactg 31
>55079_zma-miR396h:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atcttccacagctttcttgaactg 31
||||||||||||||||||||||||
Sbjct: 1 atcttccacagctttcttgaactg 24
>48946_osa-miR396b:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 tgtgatcttccacagctttcttgaactg 31
|||| |||||||||||||||||||||||
Sbjct: 4 tgtggtcttccacagctttcttgaactg 31
>55074_zma-miR396c:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactg 24
>55072_zma-miR396a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactg 41
>54871_vvi-miR396d:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>54485_sbi-miR396a:pmrd
Length = 125
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactg 41
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 7 tcttccacagctttcttgaactg 29
>51735_ptc-miR396b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>51734_ptc-miR396a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>48680_lja-miR396:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 14 tcttccacagctttcttgaactg 36
>48578_gma-miR396a:pmrd
Length = 140
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactg 41
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 16 tcttccacagctttcttgaactg 38
>47008_ath-miR396a:pmrd
Length = 151
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>55083_zma-miR396l:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactg 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactg 21
>55082_zma-miR396k:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactg 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactg 21
>55081_zma-miR396j:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactg 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactg 21
>55080_zma-miR396i:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactg 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactg 21
>48508_ghr-miR396c:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactg 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactg 21
>48507_ghr-miR396b:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactg 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactg 21
>48485_gcl-miR396a:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaactg 31
|||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactg 81
>46887_aqc-miR396a:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactg 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactg 21
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51739_ptc-miR396f:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtgatcttccacagctttcttgaactgt 32
||||| |||||| |||||||||||||||
Sbjct: 5 gtgattttccacggctttcttgaactgt 32
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
