miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54871_vvi-miR396d:pmrd
Length = 120
Score = 238 bits (120), Expect = 8e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 ctttgtattcttccacagctttcttgaactgcatttttcagactactggtgtgtttttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatttttcagactactggtgtgtttttgt 60
Query: 61 atgcactcaaagtcattgtaacagttgcggttcaataaagctgtgggaagataccaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgcactcaaagtcattgtaacagttgcggttcaataaagctgtgggaagataccaacag 120
>48680_lja-miR396:pmrd
Length = 108
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 ctttgtattcttccacagctttcttgaactgcatt 35
|||||||||||||||||||||||||||||||||||
Sbjct: 6 ctttgtattcttccacagctttcttgaactgcatt 40
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtgggaagata 113
|||||||||||||||||||||||||||||
Sbjct: 71 ttgcggttcaataaagctgtgggaagata 99
>48578_gma-miR396a:pmrd
Length = 140
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 ctttgtattcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||||||||||
Sbjct: 11 ctttgtattcttccacagctttcttgaactgcat 44
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtgggaagatac 114
||||||||||||||||||||||||||||||
Sbjct: 98 ttgcggttcaataaagctgtgggaagatac 127
>51735_ptc-miR396b:pmrd
Length = 132
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 ctttgtattcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 86 tgcggttcaataaagctgtgggaagatac 114
|||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagatac 130
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 ttgtattcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||||||||
Sbjct: 1 ttgtattcttccacagctttcttgaactgca 31
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 86 tgcggttcaataaagctgtgggaagatac 114
|||||||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagatac 128
>51734_ptc-miR396a:pmrd
Length = 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 84 gttgcggttcaataaagctgtgggaagatac 114
|||||||||||||||||||||||||||||||
Sbjct: 91 gttgcggttcaataaagctgtgggaagatac 121
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 tgtattcttccacagctttcttgaactgca 33
||||||||||||||||||||||||||||||
Sbjct: 11 tgtattcttccacagctttcttgaactgca 40
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtgggaagatac 114
||||||||||||||||||||||||||||||
Sbjct: 125 ttgcggttcaataaagctgtgggaagatac 154
>47008_ath-miR396a:pmrd
Length = 151
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 tgtattcttccacagctttcttgaactgca 33
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtgggaagatac 114
||||||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagatac 147
>55079_zma-miR396h:pmrd
Length = 116
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gttcaataaagctgtgggaa 109
||||||||||||||||||||
Sbjct: 95 gttcaataaagctgtgggaa 114
>55074_zma-miR396c:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gttcaataaagctgtgggaa 109
||||||||||||||||||||
Sbjct: 83 gttcaataaagctgtgggaa 102
>55073_zma-miR396b:pmrd
Length = 136
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gttcaataaagctgtgggaa 109
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>55072_zma-miR396a:pmrd
Length = 137
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gttcaataaagctgtgggaa 109
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>54645_sof-miR396:pmrd
Length = 134
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gttcaataaagctgtgggaa 109
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gttcaataaagctgtgggaa 109
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>54485_sbi-miR396a:pmrd
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gttcaataaagctgtgggaa 109
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>48946_osa-miR396b:pmrd
Length = 116
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gttcaataaagctgtgggaa 109
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>48945_osa-miR396a:pmrd
Length = 154
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gttcaataaagctgtgggaa 109
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>48508_ghr-miR396c:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 gttgcggttcaataaagctgtggga 108
|||||||||||||||||||||||||
Sbjct: 91 gttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgca 33
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 gttgcggttcaataaagctgtggga 108
|||||||||||||||||||||||||
Sbjct: 91 gttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgca 33
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>46887_aqc-miR396a:pmrd
Length = 122
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtgggaa 109
|||||||||||||||||||||||||
Sbjct: 97 ttgcggttcaataaagctgtgggaa 121
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcat 34
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55083_zma-miR396l:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcat 34
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcat 34
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcat 34
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>48486_gcl-miR396b:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtggga 108
||||||||||||||||||||||||
Sbjct: 78 ttgcggttcaataaagctgtggga 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcat 34
||||| ||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcat 24
>48485_gcl-miR396a:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 85 ttgcggttcaataaagctgtggga 108
||||||||||||||||||||||||
Sbjct: 24 ttgcggttcaataaagctgtggga 1
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaactgcat 34
||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcat 78
>54870_vvi-miR396c:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgc 32
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
