miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54874_vvi-miR398a:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 acaccccaagggagtggcacctgagaacaccggttgtgttggctgcgccaagctctgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acaccccaagggagtggcacctgagaacaccggttgtgttggctgcgccaagctctgcta 60
Query: 61 gctaatgcattttgtgttctcaggtcacccctttggggcacca 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctaatgcattttgtgttctcaggtcacccctttggggcacca 103
>51744_ptc-miR398a:pmrd
Length = 109
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 73 tgtgttctcaggtcacccctttggggcacc 102
||||||||||||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccctttggggcacc 109
>46889_aqc-miR398a:pmrd
Length = 92
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 71 tttgtgttctcaggtcacccctttgggg 98
||||||||||||||||||||||||||||
Sbjct: 64 tttgtgttctcaggtcacccctttgggg 91
>52988_ptc-miRf11166-akr:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 73 tgtgttctcaggtcacccctttgggg 98
||||||||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccctttgggg 100
>47012_ath-miR398a:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 70 ttttgtgttctcaggtcacccctttg 95
||||||||||||||||||||||||||
Sbjct: 72 ttttgtgttctcaggtcacccctttg 97
>48962_osa-miR398a:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 tgtgttctcaggtcacccctttggg 97
|||||||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccctttggg 109
>48582_gma-miR398b:pmrd
Length = 135
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 71 tttgtgttctcaggtcacccctttg 95
|||||||||||||||||||||||||
Sbjct: 94 tttgtgttctcaggtcacccctttg 118
>48581_gma-miR398a:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 71 tttgtgttctcaggtcacccctttg 95
|||||||||||||||||||||||||
Sbjct: 75 tttgtgttctcaggtcacccctttg 99
>48391_bol-miR398a:pmrd
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 ttgtgttctcaggtcacccctttg 95
||||||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccctttg 93
>48390_bol-miR398a:pmrd
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 ttgtgttctcaggtcacccctttg 95
||||||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccctttg 93
>48511_ghr-miR398:pmrd
Length = 67
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 ttgtgttctcaggtcacccctt 93
||||||||||||||||||||||
Sbjct: 46 ttgtgttctcaggtcacccctt 67
>47014_ath-miR398c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 tgtgttctcaggtcacccct 92
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>47013_ath-miR398b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 tgtgttctcaggtcacccct 92
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
