miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54875_vvi-miR398b:pmrd
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 gtgtcctacaggtgtgacctgagaatcacatgcccgcaccacccatctttgctctcatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtcctacaggtgtgacctgagaatcacatgcccgcaccacccatctttgctctcatgt 60
Query: 61 gttctcaggtcgcccctgctggactccc 88
||||||||||||||||||||||||||||
Sbjct: 61 gttctcaggtcgcccctgctggactccc 88
>54876_vvi-miR398c:pmrd
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 gtgtcctacaggtgtgacctgagaatcacatgcccgcaccacccatctttgctctcatgt 60
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gtgtcctacaggagtgacctgagaatcacatgcccgcatcacccatctttgctctcatgt 60
Query: 61 gttctcaggtcgcccctgctggactccc 88
||||||||||||||||||||||||||||
Sbjct: 61 gttctcaggtcgcccctgctggactccc 88
>54744_tae-miR2025:pmrd
Length = 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 54 ctcatgtgttctcaggtcgcccctgctgga 83
||||||||||||||||||||||| ||||||
Sbjct: 67 ctcatgtgttctcaggtcgcccccgctgga 96
>51745_ptc-miR398b:pmrd
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tcatgtgttctcaggtcgcccctgc 79
|||||||||||||||||||||||||
Sbjct: 53 tcatgtgttctcaggtcgcccctgc 77
>48749_mtr-miR398a:pmrd
Length = 77
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 ctcatgtgttctcaggtcgcccctg 78
|||||||||||||||||||||||||
Sbjct: 53 ctcatgtgttctcaggtcgcccctg 77
>51746_ptc-miR398c:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 catgtgttctcaggtcgcccctgc 79
||||||||||||||||||||||||
Sbjct: 66 catgtgttctcaggtcgcccctgc 89
>46890_aqc-miR398b:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 catgtgttctcaggtcgcccctgc 79
||||||||||||||||||||||||
Sbjct: 70 catgtgttctcaggtcgcccctgc 93
>47014_ath-miR398c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 tcatgtgttctcaggtcgcccctgctg 81
||||||||||||||||| |||||||||
Sbjct: 82 tcatgtgttctcaggtcacccctgctg 108
>47013_ath-miR398b:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 tcatgtgttctcaggtcgcccctgctg 81
||||||||||||||||| |||||||||
Sbjct: 83 tcatgtgttctcaggtcacccctgctg 109
>48963_osa-miR398b:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tgtgttctcaggtcgcccctgc 79
||||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctgc 79
>55090_zma-miR398c:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 catgtgttctcaggtcgcccc 76
|||||||||||||||||||||
Sbjct: 86 catgtgttctcaggtcgcccc 106
>55089_zma-miR398b:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 catgtgttctcaggtcgcccc 76
|||||||||||||||||||||
Sbjct: 119 catgtgttctcaggtcgcccc 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 53 tctcatgtgttctcaggtcgcccc 76
|||||||||||||||| |||||||
Sbjct: 27 tctcatgtgttctcagttcgcccc 4
>55088_zma-miR398a:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 56 catgtgttctcaggtcgcccc 76
|||||||||||||||||||||
Sbjct: 24 catgtgttctcaggtcgcccc 4
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 53 tctcatgtgttctcaggtcgcccc 76
|||||||||||||||| |||||||
Sbjct: 116 tctcatgtgttctcagttcgcccc 139
