miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54877_vvi-miR399a:pmrd
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 gagaataacagtgtgattctcctttggcagagatatcacgcatggagtagaaggcggtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagaataacagtgtgattctcctttggcagagatatcacgcatggagtagaaggcggtag 60
Query: 61 ctgctctgccaaaggagaattgccctgttattcaatt 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgctctgccaaaggagaattgccctgttattcaatt 97
>55102_zma-miR399l:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctgt 88
||||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgt 86
>54496_sbi-miR399h:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ctgccaaaggagaattgccctg 87
||||||||||||||||||||||
Sbjct: 92 ctgccaaaggagaattgccctg 113
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 66 ctgccaaaggagaattgccctg 87
||||||||||||||||||||||
Sbjct: 29 ctgccaaaggagaattgccctg 8
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 65 tctgccaaaggagaattgccctgttattca 94
||||||||||||||||||| | ||||||||
Sbjct: 60 tctgccaaaggagaattgcacagttattca 89
>51753_ptc-miR399g:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 65 tctgccaaaggagaattgccctgttattca 94
||||||||||||||||||| | ||||||||
Sbjct: 33 tctgccaaaggagaattgcacagttattca 4
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ctgccaaaggagaattgccctg 87
||||||||||||||||||||||
Sbjct: 64 ctgccaaaggagaattgccctg 85
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ctgccaaaggagaattgccctg 87
||||||||||||||||||||||
Sbjct: 78 ctgccaaaggagaattgccctg 99
>55101_zma-miR399k:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 148 tgccaaaggagaattgccctg 168
>55095_zma-miR399e:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 64 ctctgccaaaggagaattgccctgt 88
||||||||||||||| |||||||||
Sbjct: 82 ctctgccaaaggagagttgccctgt 106
>55093_zma-miR399c:pmrd
Length = 207
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 168 tgccaaaggagaattgccctg 188
>55091_zma-miR399a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 84 tgccaaaggagaattgccctg 104
>54884_vvi-miR399h:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 65 tctgccaaaggagaattgccctgttattc 93
||||||||||||| ||||| |||||||||
Sbjct: 31 tctgccaaaggaggattgcactgttattc 3
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 60 tgccaaaggagaattgccctg 80
>54498_sbi-miR399j:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 71 tgccaaaggagaattgccctg 91
>54497_sbi-miR399i:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 64 ctctgccaaaggagaattgccctgt 88
||||||||||||||| |||||||||
Sbjct: 79 ctctgccaaaggagagttgccctgt 103
>54491_sbi-miR399c:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 91 tgccaaaggagaattgccctg 111
>54489_sbi-miR399a:pmrd
Length = 137
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 98 tgccaaaggagaattgccctg 118
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 27 tgccaaaggagaattgccctg 7
>51752_ptc-miR399f:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 72 tgccaaaggagaattgccctg 92
>48966_osa-miR399c:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 80 tgccaaaggagaattgccctg 100
>48965_osa-miR399b:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctg 87
>48964_osa-miR399a:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagaattgccctg 87
|||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctg 139
>47015_ath-miR399a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 65 tctgccaaaggagaattgccctgttattc 93
|||||||||||||| ||||||||| ||||
Sbjct: 91 tctgccaaaggagatttgccctgtaattc 119
>55098_zma-miR399h:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 ctctgccaaaggagaattgccctg 87
||||||||||||||| ||||||||
Sbjct: 62 ctctgccaaaggagagttgccctg 85
>54879_vvi-miR399c:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 tctgccaaaggagaattgccctgt 88
|||||||||||||| |||||||||
Sbjct: 50 tctgccaaaggagagttgccctgt 73
>54494_sbi-miR399f:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 62 tgctctgccaaaggagaattgccc 85
||||||||||||||||| ||||||
Sbjct: 76 tgctctgccaaaggagatttgccc 99
