miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54878_vvi-miR399b:pmrd
Length = 117
Score = 232 bits (117), Expect = 5e-62
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1 atcaatcatagggcacctctttcttggcaggcactggctcctatatatgaatatacatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcaatcatagggcacctctttcttggcaggcactggctcctatatatgaatatacatag 60
Query: 61 cttagctgcagtaaaaagatgtgacttgccaaaggagagttgccctgtgactgcttc 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttagctgcagtaaaaagatgtgacttgccaaaggagagttgccctgtgactgcttc 117
>47017_ath-miR399c:pmrd
Length = 114
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 79 atgtgacttgccaaaggagagttgccctgtgactgcttc 117
|||| ||||||||||||||||||||||||| ||||||||
Sbjct: 76 atgtcacttgccaaaggagagttgccctgtcactgcttc 114
>54885_vvi-miR399i:pmrd
Length = 122
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 88 gccaaaggagagttgccctgtgactgcttc 117
||||||||||||||||||||||||| ||||
Sbjct: 93 gccaaaggagagttgccctgtgactacttc 122
>51755_ptc-miR399i:pmrd
Length = 108
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 85 cttgccaaaggagagttgccctgtgactg 113
|||||||||||||||||||||| ||||||
Sbjct: 77 cttgccaaaggagagttgccctatgactg 105
>48756_mtr-miR399g:pmrd
Length = 74
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 79 atgtgacttgccaaaggagagttgccctg 107
||||| |||||||||||||||||||||||
Sbjct: 46 atgtgtcttgccaaaggagagttgccctg 74
>54381_pvu-miR399a:pmrd
Length = 223
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 cttgccaaaggagagttgccctgt 108
||||||||||||||||||||||||
Sbjct: 87 cttgccaaaggagagttgccctgt 110
>54879_vvi-miR399c:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccctgtg 109
|||||||||||||||||||||||
Sbjct: 52 tgccaaaggagagttgccctgtg 74
>54492_sbi-miR399d:pmrd
Length = 205
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccctgtgactg 113
||||||||||||||||||||| |||||
Sbjct: 166 tgccaaaggagagttgccctgcgactg 192
>51754_ptc-miR399h:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 85 cttgccaaaggagagttgccctgtgac 111
||||||||||||||||| |||||||||
Sbjct: 101 cttgccaaaggagagtttccctgtgac 127
>51352_ppl-miR399b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 85 cttgccaaaggagagttgccctgtgac 111
||||||||||||||||| |||||||||
Sbjct: 101 cttgccaaaggagagtttccctgtgac 127
>48967_osa-miR399d:pmrd
Length = 286
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccctgtgactg 113
||||||||||||||||||||| |||||
Sbjct: 256 tgccaaaggagagttgccctgcgactg 282
>48751_mtr-miR399b:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 acttgccaaaggagagttgccctgtga 110
|||||||||||||||| ||||||||||
Sbjct: 70 acttgccaaaggagagctgccctgtga 96
>55095_zma-miR399e:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccctgt 108
||||||||||||||||||||||
Sbjct: 85 tgccaaaggagagttgccctgt 106
>54497_sbi-miR399i:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccctgt 108
||||||||||||||||||||||
Sbjct: 82 tgccaaaggagagttgccctgt 103
>48088_ath-miRf10988-akr:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 82 tgacttgccaaaggagagttgccctg 107
|||| |||||||||||||||||||||
Sbjct: 97 tgacctgccaaaggagagttgccctg 122
>47473_ath-miRf10373-akr:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 82 tgacttgccaaaggagagttgccctg 107
|||| |||||||||||||||||||||
Sbjct: 95 tgacctgccaaaggagagttgccctg 120
>47472_ath-miRf10372-akr:pmrd
Length = 131
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 82 tgacttgccaaaggagagttgccctg 107
|||| |||||||||||||||||||||
Sbjct: 98 tgacctgccaaaggagagttgccctg 123
>47016_ath-miR399b:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 82 tgacttgccaaaggagagttgccctg 107
|||| |||||||||||||||||||||
Sbjct: 100 tgacctgccaaaggagagttgccctg 125
>46891_aqc-miR399:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccctgtgact 112
|||||||||||||||||||| |||||
Sbjct: 72 tgccaaaggagagttgccctatgact 97
>55098_zma-miR399h:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccctg 107
|||||||||||||||||||||
Sbjct: 65 tgccaaaggagagttgccctg 85
>55102_zma-miR399l:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 cttgccaaaggagagttgccctgt 108
|||||||||||||| |||||||||
Sbjct: 63 cttgccaaaggagaattgccctgt 86
>54561_sly-miR399:pmrd
Length = 71
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccct 106
||||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgccct 70
>48973_osa-miR399j:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccct 106
||||||||||||||||||||
Sbjct: 76 tgccaaaggagagttgccct 95
