miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54879_vvi-miR399c:pmrd
Length = 82
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 accggtctcagggcctctttcacttggtaggtgacatagatgtgaatgatctgccaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accggtctcagggcctctttcacttggtaggtgacatagatgtgaatgatctgccaaagg 60
Query: 61 agagttgccctgtgtctggtta 82
||||||||||||||||||||||
Sbjct: 61 agagttgccctgtgtctggtta 82
>55095_zma-miR399e:pmrd
Length = 124
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tctgccaaaggagagttgccctgt 73
||||||||||||||||||||||||
Sbjct: 83 tctgccaaaggagagttgccctgt 106
>54497_sbi-miR399i:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tctgccaaaggagagttgccctgt 73
||||||||||||||||||||||||
Sbjct: 80 tctgccaaaggagagttgccctgt 103
>48088_ath-miRf10988-akr:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 aatgatctgccaaaggagagttgccctg 72
||||| ||||||||||||||||||||||
Sbjct: 95 aatgacctgccaaaggagagttgccctg 122
>47473_ath-miRf10373-akr:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 aatgatctgccaaaggagagttgccctg 72
||||| ||||||||||||||||||||||
Sbjct: 93 aatgacctgccaaaggagagttgccctg 120
>47472_ath-miRf10372-akr:pmrd
Length = 131
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 aatgatctgccaaaggagagttgccctg 72
||||| ||||||||||||||||||||||
Sbjct: 96 aatgacctgccaaaggagagttgccctg 123
>47016_ath-miR399b:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 aatgatctgccaaaggagagttgccctg 72
||||| ||||||||||||||||||||||
Sbjct: 98 aatgacctgccaaaggagagttgccctg 125
>55098_zma-miR399h:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tctgccaaaggagagttgccctg 72
|||||||||||||||||||||||
Sbjct: 63 tctgccaaaggagagttgccctg 85
>54878_vvi-miR399b:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tgccaaaggagagttgccctgtg 74
|||||||||||||||||||||||
Sbjct: 87 tgccaaaggagagttgccctgtg 109
>46891_aqc-miR399:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 atctgccaaaggagagttgccct 71
|||||||||||||||||||||||
Sbjct: 69 atctgccaaaggagagttgccct 91
>54885_vvi-miR399i:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 gccaaaggagagttgccctgtg 74
||||||||||||||||||||||
Sbjct: 93 gccaaaggagagttgccctgtg 114
>54492_sbi-miR399d:pmrd
Length = 205
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 ctgccaaaggagagttgccctg 72
||||||||||||||||||||||
Sbjct: 165 ctgccaaaggagagttgccctg 186
>54381_pvu-miR399a:pmrd
Length = 223
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgccaaaggagagttgccctgt 73
||||||||||||||||||||||
Sbjct: 89 tgccaaaggagagttgccctgt 110
>48973_osa-miR399j:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 tctgccaaaggagagttgccct 71
||||||||||||||||||||||
Sbjct: 74 tctgccaaaggagagttgccct 95
>48967_osa-miR399d:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 ctgccaaaggagagttgccctg 72
||||||||||||||||||||||
Sbjct: 255 ctgccaaaggagagttgccctg 276
>47017_ath-miR399c:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgccaaaggagagttgccctgt 73
||||||||||||||||||||||
Sbjct: 84 tgccaaaggagagttgccctgt 105
>48756_mtr-miR399g:pmrd
Length = 74
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 tgccaaaggagagttgccctg 72
|||||||||||||||||||||
Sbjct: 54 tgccaaaggagagttgccctg 74
>47015_ath-miR399a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 atctgccaaaggagagttgccctgt 73
||||||||||||||| |||||||||
Sbjct: 90 atctgccaaaggagatttgccctgt 114
>54877_vvi-miR399a:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 50 tctgccaaaggagagttgccctgt 73
|||||||||||||| |||||||||
Sbjct: 65 tctgccaaaggagaattgccctgt 88
>54561_sly-miR399:pmrd
Length = 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tgccaaaggagagttgccct 71
||||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgccct 70
>51755_ptc-miR399i:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tgccaaaggagagttgccct 71
||||||||||||||||||||
Sbjct: 79 tgccaaaggagagttgccct 98
>53699_ptc-miRf11877-akr:pmrd
Length = 102
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 gccaaaggagagttgccct 71
|||||||||||||||||||
Sbjct: 78 gccaaaggagagttgccct 96
>51758_ptc-miR399l:pmrd
Length = 109
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 gccaaaggagagttgccct 71
|||||||||||||||||||
Sbjct: 82 gccaaaggagagttgccct 100
>51754_ptc-miR399h:pmrd
Length = 132
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 tgccaaaggagagttgccctgtg 74
||||||||||||||| |||||||
Sbjct: 103 tgccaaaggagagtttccctgtg 125
>51352_ppl-miR399b:pmrd
Length = 132
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 tgccaaaggagagttgccctgtg 74
||||||||||||||| |||||||
Sbjct: 103 tgccaaaggagagtttccctgtg 125
>48751_mtr-miR399b:pmrd
Length = 112
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 tgccaaaggagagttgccctgtg 74
||||||||||||| |||||||||
Sbjct: 73 tgccaaaggagagctgccctgtg 95
