miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54881_vvi-miR399e:pmrd
Length = 112
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 gcatattacagggcaaattatcttttggcaggcagccacttagagacacagccaagccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcatattacagggcaaattatcttttggcaggcagccacttagagacacagccaagccat 60
Query: 61 gcattcttgtagtgtgccctctgccaaaggagatttgcccggcaattcttct 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcattcttgtagtgtgccctctgccaaaggagatttgcccggcaattcttct 112
>51756_ptc-miR399j:pmrd
Length = 112
Score = 67.9 bits (34), Expect = 1e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 71 agtgtgccctctgccaaaggagatttgcccggcaattcttct 112
||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 71 agtgtgccctctgccaaaggagatttgtccggcaaatcttct 112
>51749_ptc-miR399c:pmrd
Length = 126
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagatttgcccggcaattcttc 111
||||||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattcttc 126
>51748_ptc-miR399b:pmrd
Length = 126
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagatttgcccggcaattcttc 111
||||||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattcttc 126
>47020_ath-miR399f:pmrd
Length = 118
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagatttgcccggcaattct 109
|||||||||||||||||||||||| ||||||
Sbjct: 85 ctctgccaaaggagatttgcccggtaattct 115
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagatttgcccggcaattc 108
|||||||||||||||||||||| |||||||
Sbjct: 63 ctctgccaaaggagatttgccccgcaattc 92
>47018_ath-miR399d:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagatttgcccggcaattc 108
|||||||||||||||||||||| |||||||
Sbjct: 67 ctctgccaaaggagatttgccccgcaattc 96
>52630_ptc-miRf10808-akr:pmrd
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 82 tgccaaaggagatttgcccggcaat 106
|||||||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 82 tgccaaaggagatttgcccggcaat 106
|||||||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
>47015_ath-miR399a:pmrd
Length = 123
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagatttgcccggcaattcttct 112
||||||||||||||||||||| | |||||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaattcttct 123
>54494_sbi-miR399f:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagatttgcccggcaat 106
|||||||||||||||||||||| |||||
Sbjct: 78 ctctgccaaaggagatttgcccagcaat 105
>51747_ptc-miR399a:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattc 108
|||||||||||||||||||| |||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattc 117
>48969_osa-miR399f:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagatttgcccggcaat 106
|||||||||||||||||||||| |||||
Sbjct: 84 ctctgccaaaggagatttgcccagcaat 111
>48750_mtr-miR399a:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 70 tagtgtgccctctgccaaaggagatttgcccggcaattct 109
|||||||| ||||||||||||||||||||| || |||||
Sbjct: 83 tagtgtgcaatctgccaaaggagatttgcccagcgattct 122
>48377_bna-miR399:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagatttgcccgg 102
||||||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgcccgg 101
>54497_sbi-miR399i:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 tgccctctgccaaaggagatttgccc 100
||||||||||||||||||| ||||||
Sbjct: 75 tgccctctgccaaaggagagttgccc 100
>54493_sbi-miR399e:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaat 106
|||||||||||||||||||| |||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaat 106
|||||||||||||||||||| |||||
Sbjct: 84 ctgccaaaggagatttgcccagcaat 109
>48968_osa-miR399e:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaat 106
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>48754_mtr-miR399e:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagatttgcccggcaattct 109
||||||||||||||||||||| || |||||
Sbjct: 93 tctgccaaaggagatttgcccagcgattct 122
>47019_ath-miR399e:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 cctctgccaaaggagatttgcc 99
||||||||||||||||||||||
Sbjct: 75 cctctgccaaaggagatttgcc 96
>48973_osa-miR399j:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 gccctctgccaaaggagatttgccc 100
|||||||||||||||||| ||||||
Sbjct: 70 gccctctgccaaaggagagttgccc 94
>48970_osa-miR399g:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagatttgccc 100
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>55098_zma-miR399h:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 77 ccctctgccaaaggagatttgccc 100
||||||||||||||||| ||||||
Sbjct: 60 ccctctgccaaaggagagttgccc 83
>55095_zma-miR399e:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 77 ccctctgccaaaggagatttgccc 100
||||||||||||||||| ||||||
Sbjct: 80 ccctctgccaaaggagagttgccc 103
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgccc 100
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>54882_vvi-miR399f:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattcttct 112
||||| ||||||||||| || |||||||||||
Sbjct: 75 ctgccgaaggagatttgtcctgcaattcttct 106
