miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54884_vvi-miR399h:pmrd
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 aggaataacagtgcaatcctcctttggcagaaagatcatgcacatgcatacttctgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggaataacagtgcaatcctcctttggcagaaagatcatgcacatgcatacttctgtttt 60
Query: 61 gccaaaggagaattgccctgccattcgctc 90
||||||||||||||||||||||||||||||
Sbjct: 61 gccaaaggagaattgccctgccattcgctc 90
>51752_ptc-miR399f:pmrd
Length = 101
Score = 77.8 bits (39), Expect = 1e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 45 tgcatacttctgttttgccaaaggagaattgccctgccattcg 87
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 57 tgcatatttctgttttgccaaaggagaattgccctgccattcg 99
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 75.8 bits (38), Expect = 5e-15
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 45 tgcatacttctgttttgccaaaggagaattgccctgccattc 86
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 42 tgcatatttctgttttgccaaaggagaattgccctgccattc 1
>55091_zma-miR399a:pmrd
Length = 123
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 ttgccaaaggagaattgccctgccattc 86
||||||||||||||||||||||||||||
Sbjct: 83 ttgccaaaggagaattgccctgccattc 110
>54496_sbi-miR399h:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgccattcg 87
||||||||||||||||||||||||||||
Sbjct: 93 tgccaaaggagaattgccctgccattcg 120
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 60 tgccaaaggagaattgccctgccattc 86
|||||||||||||||||||||||||||
Sbjct: 28 tgccaaaggagaattgccctgccattc 2
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 3 gaataacagtgcaatcctcctttggcaga 31
||||||| ||||||| |||||||||||||
Sbjct: 88 gaataactgtgcaattctcctttggcaga 60
>51753_ptc-miR399g:pmrd
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgccattc 86
|||||||||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccattc 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 gaataacagtgcaatcctcctttggcaga 31
||||||| ||||||| |||||||||||||
Sbjct: 5 gaataactgtgcaattctcctttggcaga 33
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgccattc 86
|||||||||||||||||||||||||||
Sbjct: 79 tgccaaaggagaattgccctgccattc 105
>48965_osa-miR399b:pmrd
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgccattc 86
|||||||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattc 93
>48752_mtr-miR399c:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 ttctgttttgccaaaggagaattgccctgccatt 85
||||| |||||||||||||| |||||||||||||
Sbjct: 72 ttctggtttgccaaaggagatttgccctgccatt 105
>54489_sbi-miR399a:pmrd
Length = 137
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgccattcgc 88
|||||||||||||||||||||| ||||||
Sbjct: 98 tgccaaaggagaattgccctgcgattcgc 126
>54498_sbi-miR399j:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 ttgccaaaggagaattgccctgcc 82
||||||||||||||||||||||||
Sbjct: 70 ttgccaaaggagaattgccctgcc 93
>55093_zma-miR399c:pmrd
Length = 207
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgccattc 86
|||||||||||||||||||||| ||||
Sbjct: 168 tgccaaaggagaattgccctgcgattc 194
>54491_sbi-miR399c:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgccattc 86
|||||||||||||||||||||| ||||
Sbjct: 91 tgccaaaggagaattgccctgcgattc 117
>48966_osa-miR399c:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgccattc 86
|||||||||||||||||||||| ||||
Sbjct: 80 tgccaaaggagaattgccctgcgattc 106
>55102_zma-miR399l:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ttgccaaaggagaattgccctg 80
||||||||||||||||||||||
Sbjct: 64 ttgccaaaggagaattgccctg 85
>48964_osa-miR399a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgc 81
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
>55101_zma-miR399k:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctg 80
|||||||||||||||||||||
Sbjct: 148 tgccaaaggagaattgccctg 168
>54877_vvi-miR399a:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 3 gaataacagtgcaatcctcctttggcaga 31
||||||||| ||||| |||||||||||||
Sbjct: 93 gaataacagggcaattctcctttggcaga 65
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctg 80
|||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctg 87
>55094_zma-miR399d:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgccattcg 87
|||||||||||| ||||||||||||||
Sbjct: 86 tgccaaaggagagctgccctgccattcg 113
>48513_ghr-miR399b:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ttttgccaaaggagaattgccctg 80
||||||||||||||| ||||||||
Sbjct: 54 ttttgccaaaggagatttgccctg 77
>48316_bdi-miR399:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 tgccaaaggagaattgccctgcca 83
||||||||||||||| ||||||||
Sbjct: 73 tgccaaaggagaattaccctgcca 96
