miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54888_vvi-miR403c:pmrd
Length = 115
Score = 228 bits (115), Expect = 7e-61
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
Query: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgtgatctgtcc 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgtgatctgtcc 115
>54890_vvi-miR403e:pmrd
Length = 115
Score = 212 bits (107), Expect = 4e-56
Identities = 113/115 (98%)
Strand = Plus / Plus
Query: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgtgtac 60
Query: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgtgatctgtcc 115
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgcgatctgtcc 115
>54886_vvi-miR403a:pmrd
Length = 115
Score = 206 bits (104), Expect = 3e-54
Identities = 107/108 (99%)
Strand = Plus / Plus
Query: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
Query: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgtga 108
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 taatcacggggcgattcgacggcgttagattcacgcacaaactcgtga 108
>51760_ptc-miR403b:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 83 cgttagattcacgcacaaactcgtgatctgtc 114
||||||||||||||||||||||| ||||||||
Sbjct: 69 cgttagattcacgcacaaactcgcgatctgtc 100
>54889_vvi-miR403d:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| ||||||||
Sbjct: 55 gttagattcacgcacaaactcgggatctgtc 85
>54887_vvi-miR403b:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| ||||||||
Sbjct: 55 gttagattcacgcacaaactcgggatctgtc 85
>54891_vvi-miR403f:pmrd
Length = 108
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| |||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtc 107
>51759_ptc-miR403a:pmrd
Length = 132
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| |||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtc 132
>51353_ppl-miR403:pmrd
Length = 135
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| |||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtc 132
>48413_bst-miR403:pmrd
Length = 124
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| |||||||
Sbjct: 90 ttagattcacgcacaaactcgtaatctgtc 119
>47024_ath-miR403:pmrd
Length = 135
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| |||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtc 132
>48424_cpa-miR403:pmrd
Length = 126
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 86 tagattcacgcacaaactcgtgatctgtc 114
||||||||||||||||||||| |||||||
Sbjct: 91 tagattcacgcacaaactcgtaatctgtc 119
>54669_stu-miR403:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tagattcacgcacaaactcgt 106
|||||||||||||||||||||
Sbjct: 72 tagattcacgcacaaactcgt 92
>51761_ptc-miR403c:pmrd
Length = 79
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcg 105
|||||||||||||||||||||
Sbjct: 59 ttagattcacgcacaaactcg 79
