miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54889_vvi-miR403d:pmrd
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 acaaacctcgagtttgtgcgcgaatccaacccctcaatcttctttcaaaggggtgttaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acaaacctcgagtttgtgcgcgaatccaacccctcaatcttctttcaaaggggtgttaga 60
Query: 61 ttcacgcacaaactcgggatctgtct 86
||||||||||||||||||||||||||
Sbjct: 61 ttcacgcacaaactcgggatctgtct 86
>54887_vvi-miR403b:pmrd
Length = 86
Score = 155 bits (78), Expect = 6e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 1 acaaacctcgagtttgtgcgcgaatccaacccctcaatcttctttcaaaggggtgttaga 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 acaaacctcgagtttgtgcgcgaatccaacgcctcgatcttctttcaaaggggtgttaga 60
Query: 61 ttcacgcacaaactcgggatctgtct 86
||||||||||||||||||||||||||
Sbjct: 61 ttcacgcacaaactcgggatctgtct 86
>54890_vvi-miR403e:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 55 gttagattcacgcacaaactcgggatctgtc 85
|||||||||||||||||||||| ||||||||
Sbjct: 84 gttagattcacgcacaaactcgcgatctgtc 114
>54888_vvi-miR403c:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 55 gttagattcacgcacaaactcgggatctgtc 85
|||||||||||||||||||||| ||||||||
Sbjct: 84 gttagattcacgcacaaactcgtgatctgtc 114
>51760_ptc-miR403b:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 55 gttagattcacgcacaaactcgggatctgtc 85
|||||||||||||||||||||| ||||||||
Sbjct: 70 gttagattcacgcacaaactcgcgatctgtc 100
>54891_vvi-miR403f:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 ttagattcacgcacaaactcgggatctgtct 86
||||||||||||||||||||| ||||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtct 108
>54669_stu-miR403:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 47 aaaggggtgttagattcacgcacaaac 73
|||||| ||||||||||||||||||||
Sbjct: 45 aaagggttgttagattcacgcacaaac 19
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tagattcacgcacaaactcg 76
||||||||||||||||||||
Sbjct: 72 tagattcacgcacaaactcg 91
>51353_ppl-miR403:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 ttagattcacgcacaaactcgggatctgtct 86
||||||||||||||||||||| ||||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtct 133
>48413_bst-miR403:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 ttagattcacgcacaaactcgggatctgtct 86
||||||||||||||||||||| ||||||||
Sbjct: 90 ttagattcacgcacaaactcgtaatctgtct 120
>47024_ath-miR403:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 ttagattcacgcacaaactcgggatctgtct 86
||||||||||||||||||||| ||||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtct 133
>54886_vvi-miR403a:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 gttagattcacgcacaaactcg 76
||||||||||||||||||||||
Sbjct: 84 gttagattcacgcacaaactcg 105
>51759_ptc-miR403a:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 56 ttagattcacgcacaaactcgggatctgtc 85
||||||||||||||||||||| |||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtc 132
>48424_cpa-miR403:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 tagattcacgcacaaactcgggatctgtct 86
|||||||||||||||||||| ||||||||
Sbjct: 91 tagattcacgcacaaactcgtaatctgtct 120
>51761_ptc-miR403c:pmrd
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ttagattcacgcacaaactcg 76
|||||||||||||||||||||
Sbjct: 59 ttagattcacgcacaaactcg 79
>54562_sly-miR403:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 54 tgttagattcacgcacaaac 73
||||||||||||||||||||
Sbjct: 54 tgttagattcacgcacaaac 35
