miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54891_vvi-miR403f:pmrd
Length = 108
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 tgagatgaggagtttgtgcgtgactctaaaaccgcctgatctaaaccttttcccgatgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgagatgaggagtttgtgcgtgactctaaaaccgcctgatctaaaccttttcccgatgcg 60
Query: 61 ataccttttctatggtcttagattcacgcacaaactcgtaatctgtct 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ataccttttctatggtcttagattcacgcacaaactcgtaatctgtct 108
>51353_ppl-miR403:pmrd
Length = 135
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcgtaatctgtct 108
|||||||||||||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtct 133
>48413_bst-miR403:pmrd
Length = 124
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcgtaatctgtct 108
|||||||||||||||||||||||||||||||
Sbjct: 90 ttagattcacgcacaaactcgtaatctgtct 120
>47024_ath-miR403:pmrd
Length = 135
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcgtaatctgtct 108
|||||||||||||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtct 133
>51759_ptc-miR403a:pmrd
Length = 132
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcgtaatctgtc 107
||||||||||||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtc 132
>48424_cpa-miR403:pmrd
Length = 126
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 79 tagattcacgcacaaactcgtaatctgtct 108
||||||||||||||||||||||||||||||
Sbjct: 91 tagattcacgcacaaactcgtaatctgtct 120
>54888_vvi-miR403c:pmrd
Length = 115
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcgtaatctgtc 107
|||||||||||||||||||||| |||||||
Sbjct: 85 ttagattcacgcacaaactcgtgatctgtc 114
>54669_stu-miR403:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tagattcacgcacaaactcgtaat 102
||||||||||||||||||||||||
Sbjct: 72 tagattcacgcacaaactcgtaat 95
>54889_vvi-miR403d:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcgtaatctgtct 108
||||||||||||||||||||| ||||||||
Sbjct: 56 ttagattcacgcacaaactcgggatctgtct 86
>54887_vvi-miR403b:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcgtaatctgtct 108
||||||||||||||||||||| ||||||||
Sbjct: 56 ttagattcacgcacaaactcgggatctgtct 86
>54890_vvi-miR403e:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcgtaatctgtc 107
||||||||||||||||||||| |||||||
Sbjct: 85 ttagattcacgcacaaactcgcgatctgtc 114
>54886_vvi-miR403a:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcgt 99
||||||||||||||||||||||
Sbjct: 85 ttagattcacgcacaaactcgt 106
>51760_ptc-miR403b:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcgtaatctgtc 107
||||||||||||||||||||| |||||||
Sbjct: 71 ttagattcacgcacaaactcgcgatctgtc 100
>51761_ptc-miR403c:pmrd
Length = 79
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 ttagattcacgcacaaactcg 98
|||||||||||||||||||||
Sbjct: 59 ttagattcacgcacaaactcg 79
>54562_sly-miR403:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 79 tagattcacgcacaaactcgtaat 102
||||||||||||||| ||||||||
Sbjct: 88 tagattcacgcacaagctcgtaat 111
