miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54892_vvi-miR408:pmrd
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 aagaggaagacggggacgaggtagtgcatggatggaactattaacagaagaatgttaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaggaagacggggacgaggtagtgcatggatggaactattaacagaagaatgttaagc 60
Query: 61 tgtttttgctctacccatgcactgcctcttccctggctctgtctctc 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtttttgctctacccatgcactgcctcttccctggctctgtctctc 107
>51762_ptc-miR408:pmrd
Length = 105
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 61 tgtttttgctctacccatgcactgcctcttccctggct 98
|||||| |||||||||||||||||||||||||||||||
Sbjct: 60 tgttttggctctacccatgcactgcctcttccctggct 97
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 60 ctgtttttgctctacccatgcactgcctcttccctggctc 99
||||||| |||||||||||||||||||||||||||||||
Sbjct: 43 ctgttttgtctctacccatgcactgcctcttccctggctc 4
>47031_ath-miR408:pmrd
Length = 218
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 60 ctgtttttgctctacccatgcactgcctcttccctggctc 99
||||||| |||||||||||||||||||||||||||||||
Sbjct: 103 ctgttttgtctctacccatgcactgcctcttccctggctc 142
>54389_rco-miR408:pmrd
Length = 129
Score = 61.9 bits (31), Expect = 9e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 60 ctgtttttgctctacccatgcactgcctcttccctggct 98
||||||| ||||||||| |||||||||||||||||||||
Sbjct: 73 ctgttttggctctacccctgcactgcctcttccctggct 111
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 61 tgtttttgctctacccatgcactgcctcttccctg 95
|||||| ||||||||||||||||||||||||||||
Sbjct: 45 tgttttggctctacccatgcactgcctcttccctg 79
>51347_ppe-miR408:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 58 agctgtttttgctctacccatgcactgcctcttccctggct 98
||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 56 agctgttgtggctctactcatgcactgcctcttccctggct 96
>48428_cpt-miR408:pmrd
Length = 100
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 60 ctgtttttgctctacccatgcactgcctcttccctggctct 100
||||||| |||| |||||||||||||||||||||||||||
Sbjct: 53 ctgttttggctcctcccatgcactgcctcttccctggctct 93
>46892_aqc-miR408:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 61 tgtttttgctctacccatgcactgcctcttccctggct 98
|||| ||||||| ||||||||||||||||||||||||
Sbjct: 38 tgttgttgctctttccatgcactgcctcttccctggct 1
>54649_sof-miR408d:pmrd
Length = 215
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 73 acccatgcactgcctcttccctggctc 99
|||| ||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggctc 198
>51566_pta-miR408:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 atgcactgcctcttccctggctc 99
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>51397_ppt-miR408b:pmrd
Length = 144
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 catgcactgcctcttccctggct 98
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>55104_zma-miR408:pmrd
Length = 191
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctc 174
>54690_tae-miR408:pmrd
Length = 187
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158
>54648_sof-miR408c:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>54647_sof-miR408b:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>54646_sof-miR408a:pmrd
Length = 283
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctc 266
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 atgcactgcctcttccctggct 98
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>48975_osa-miR408:pmrd
Length = 213
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 ccatgcactgcctcttccctgg 96
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggct 98
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
