miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54894_vvi-miR479:pmrd
Length = 94
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 gtagacatggtgtggtattggttcggctcatcttctttcattcattttcatcggctcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagacatggtgtggtattggttcggctcatcttctttcattcattttcatcggctcaaa 60
Query: 61 gacgagccgaaccaatatcactcttgtatgcttc 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 gacgagccgaaccaatatcactcttgtatgcttc 94
>51695_ptc-miR171l:pmrd
Length = 112
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 59 aagacgagccgaaccaatatcactcttgtatgcttc 94
||||||||||||| ||||||||||||||||||||||
Sbjct: 74 aagacgagccgaatcaatatcactcttgtatgcttc 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 gtagacatggtgtggtattggttcggctcatcttct 36
||||||| |||||| ||||||| |||||||||||||
Sbjct: 7 gtagacacggtgtgatattggtccggctcatcttct 42
>51697_ptc-miR171n:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 59 aagacgagccgaaccaatatcactcttgtatgcttc 94
||||||||||||| |||||||||||||||| |||||
Sbjct: 66 aagacgagccgaatcaatatcactcttgtacgcttc 101
>51696_ptc-miR171m:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 59 aagacgagccgaaccaatatcactcttgtatgcttc 94
||||||||||||| |||||||||||||||| |||||
Sbjct: 66 aagacgagccgaatcaatatcactcttgtacgcttc 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 3 agacatggtgtggtattggttcggctcatcttct 36
|||||||| ||||||||| | |||||||||||||
Sbjct: 6 agacatggcgtggtattgatccggctcatcttct 39
>48568_gma-miR171b:pmrd
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 60 agacgagccgaaccaatatcactcttgtatgctt 93
|||||||||||| ||||||||||||||| |||||
Sbjct: 59 agacgagccgaatcaatatcactcttgtttgctt 92
>48721_mtr-miR171b:pmrd
Length = 135
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 62 acgagccgaaccaatatcactcttgtatgcttc 94
|||||||||| ||||||||||||||| ||||||
Sbjct: 1 acgagccgaatcaatatcactcttgtttgcttc 33
>55038_zma-miR171k:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 gagccgaaccaatatcactcttgtatgcttc 94
|||||||||||||||||||| ||||| ||||
Sbjct: 67 gagccgaaccaatatcactcatgtattcttc 97
>54457_sbi-miR171f:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 gagccgaaccaatatcactcttgtatgcttc 94
|||||||||||||||||||| ||||| ||||
Sbjct: 82 gagccgaaccaatatcactcatgtattcttc 112
>54456_sbi-miR171e:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 gagccgaaccaatatcactcttgtatgcttc 94
|||||||||||||||||||| ||||| ||||
Sbjct: 87 gagccgaaccaatatcactcatgtattcttc 117
>48902_osa-miR171h:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 gagccgaaccaatatcactcttgtatgcttc 94
|||||||||||||||||||| ||||| ||||
Sbjct: 56 gagccgaaccaatatcactcatgtattcttc 86
>46854_ach-miR171:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 agacatggtgtggtattggttcggctcatct 33
||||| |||||||||||||||||| ||||||
Sbjct: 10 agacaaggtgtggtattggttcggttcatct 40
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 cgagccgaaccaatatcactcttgtat 89
||||||||| |||||||||||||||||
Sbjct: 89 cgagccgaatcaatatcactcttgtat 115
>51798_ptc-miR479:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 aagacgagccgaaccaatatcactct 84
||||||||||||| ||||||||||||
Sbjct: 60 aagacgagccgaatcaatatcactct 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 ggtgtggtattggttcggctcatcttct 36
|||||| ||||||| |||||||||||||
Sbjct: 1 ggtgtgatattggtccggctcatcttct 28
>55035_zma-miR171h:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 64 gagccgaaccaatatcactcttgta 88
|||||||||||||||||||| ||||
Sbjct: 87 gagccgaaccaatatcactcatgta 111
