miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54898_vvi-miR535c:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 tgtaattgcttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaattgcttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgact 60
Query: 61 gtgtacaggcgtgctctctctcgctgtcatacaatcttctc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtacaggcgtgctctctctcgctgtcatacaatcttctc 101
>54897_vvi-miR535b:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 tgtaattgcttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaattgcttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgact 60
Query: 61 gtgtacaggcgtgctctctctcgctgtcatacaatcttctc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtacaggcgtgctctctctcgctgtcatacaatcttctc 101
>54896_vvi-miR535a:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 tgtaattgcttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaattgcttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgact 60
Query: 61 gtgtacaggcgtgctctctctcgctgtcatacaatcttctc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtacaggcgtgctctctctcgctgtcatacaatcttctc 101
>54900_vvi-miR535e:pmrd
Length = 101
Score = 184 bits (93), Expect = 8e-48
Identities = 99/101 (98%)
Strand = Plus / Plus
Query: 1 tgtaattgcttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgact 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgtaattgcttgacaacgagagagagcacgctagtctgcattcatgcgaggaacatgact 60
Query: 61 gtgtacaggcgtgctctctctcgctgtcatacaatcttctc 101
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 gtgtacaggcgtgctctctgtcgctgtcatacaatcttctc 101
>54899_vvi-miR535d:pmrd
Length = 101
Score = 184 bits (93), Expect = 8e-48
Identities = 99/101 (98%)
Strand = Plus / Plus
Query: 1 tgtaattgcttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgact 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgtaattgcttgacaacgagagagagcacgctagtctgcattcatgcgaggaacatgact 60
Query: 61 gtgtacaggcgtgctctctctcgctgtcatacaatcttctc 101
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 gtgtacaggcgtgctctctgtcgctgtcatacaatcttctc 101
>46905_aqc-miR535:pmrd
Length = 87
Score = 61.9 bits (31), Expect = 8e-11
Identities = 74/87 (85%), Gaps = 6/87 (6%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgctagtcagcattcatgc-gagga-----acatgactgtgt 64
||||||||||||||||||||| |||| |||||||||| ||||| | |||||||| |
Sbjct: 1 tgacaacgagagagagcacgcgagtcggcattcatgcagaggatatataaatgactgtct 60
Query: 65 acaggcgtgctctctctcgctgtcata 91
||| ||||||| ||||||| |||||||
Sbjct: 61 acatgcgtgctttctctcgttgtcata 87
>54390_rco-miR535:pmrd
Length = 91
Score = 56.0 bits (28), Expect = 5e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 10 ttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatg 57
||||||||||||||||||||||| || ||| |||||| |||||||||
Sbjct: 10 ttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatg 57
>51422_ppt-miR535c:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 2 tgacaacgagagagagcacgct 23
>51421_ppt-miR535b:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 2 tgacaacgagagagagcacgct 23
>51420_ppt-miR535a:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 27 tgacaacgagagagagcacgct 48
>51423_ppt-miR535d:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgc 31
|||||||||||||||||||||
Sbjct: 3 tgacaacgagagagagcacgc 23
>49023_osa-miR535:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgc 31
|||||||||||||||||||||
Sbjct: 6 tgacaacgagagagagcacgc 26
