miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48828_osa-miR160c:pmrd
Length = 99
Score = 99.6 bits (50), Expect = 6e-22
Identities = 84/94 (89%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgccactcatctatagcaacattccttcctgatgaggttgc 87
|||||||||||||||||||||||||||||||| ||||||| | | || ||||||||
Sbjct: 4 atgtgcctggctccctgtatgccactcatctagagcaacaaacttctgcga-gaggttgc 62
Query: 88 ctaggatggatggcgtgcacggagccaagcatat 121
||| ||||||||||||||||||||||||||||||
Sbjct: 63 ctatgatggatggcgtgcacggagccaagcatat 96
>54940_zma-miR160c:pmrd
Length = 100
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 26 ggatgtgcctggctccctgtatgccactcatctatagcaac 66
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2 ggatgtgcctggctccctgtatgccactcatctagagcaac 42
>54759_ttu-miR160a:pmrd
Length = 87
Score = 63.9 bits (32), Expect = 3e-11
Identities = 75/88 (85%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccactcatctatagcaacattccttcctgatgaggttgccta 90
||||||||||||||||||||||||||| | ||||||| | || || |||||||||
Sbjct: 1 tgcctggctccctgtatgccactcatccagagcaaca-ccttttgcaataaggttgcctg 59
Query: 91 ggatggatggcgtgcacggagccaagca 118
||||||||||||||||||| |||||||
Sbjct: 60 cgatggatggcgtgcacggatccaagca 87
>54406_sbi-miR160c:pmrd
Length = 83
Score = 60.0 bits (30), Expect = 5e-10
Identities = 76/88 (86%), Gaps = 5/88 (5%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccactcatctatagcaacattccttcctgatgaggttgccta 90
||||||||||||||||||||||||||||| | ||||| || ||| || |||||||||
Sbjct: 1 tgcctggctccctgtatgccactcatctagatcaaca--actacct-at--ggttgccta 55
Query: 91 ggatggatggcgtgcacggagccaagca 118
||||| |||||||||||| ||||||||
Sbjct: 56 tgatggttggcgtgcacggtgccaagca 83
>54675_tae-miR160:pmrd
Length = 148
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 24 tgggatgtgcctggctccctgtatgccactc 54
|||||| ||||||||||||||||||||||||
Sbjct: 15 tgggatatgcctggctccctgtatgccactc 45
>48827_osa-miR160b:pmrd
Length = 139
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgccactcat 56
|||||||||||||||||||||||||||
Sbjct: 29 gtgcctggctccctgtatgccactcat 55
>48832_osa-miR160m:pmrd
Length = 82
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccactcat 56
||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcat 26
>48829_osa-miR160d:pmrd
Length = 142
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 25 gggatgtgcctggctccctgtatgccactc 54
||||| ||||||||||||||||||||||||
Sbjct: 2 gggatatgcctggctccctgtatgccactc 31
>54780_vvi-miR160c:pmrd
Length = 106
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 24 tgggatgtgcctggctccctgtatgccac 52
|||| ||||||||||||||||||||||||
Sbjct: 4 tgggttgtgcctggctccctgtatgccac 32
>48791_oba-miR160:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgccact 53
|||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccact 26
>54946_zma-miR160i:pmrd
Length = 81
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccactc 54
||||||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgccactc 25
>54942_zma-miR160e:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccactc 54
||||||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgccactc 32
>54941_zma-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccactc 54
||||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccactc 44
>54939_zma-miR160b:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgccac 52
||||||||||||||||||||||||
Sbjct: 19 tgtgcctggctccctgtatgccac 42
>54408_sbi-miR160e:pmrd
Length = 95
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccactc 54
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>54407_sbi-miR160d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccactc 54
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>51610_ptc-miR160c:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 8 atgtgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 8 atgtgcctggctccctgtatgcca 31
>48833_osa-miR160n:pmrd
Length = 131
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccactc 54
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>48826_osa-miR160a:pmrd
Length = 88
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgccac 52
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>48704_mtr-miR160e:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 3 atgtgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 3 atgtgcctggctccctgtatgcca 26
>48658_hvv-miR160a:pmrd
Length = 344
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 24 tgggatgtgcctggctccctgtatgcca 51
|||||| |||||||||||||||||||||
Sbjct: 317 tgggatatgcctggctccctgtatgcca 344
>48542_gma-miR160a:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 18 atgtgcctggctccctgtatgcca 41
>54938_zma-miR160a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgccac 52
|||||||||||||||||||||||
Sbjct: 9 gtgcctggctccctgtatgccac 31
>51363_ppt-miR160e:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccact 53
|||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccact 52
>48703_mtr-miR160d:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 4 tgtgcctggctccctgtatgcca 26
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgccac 52
|||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgccac 26
>46935_ath-miR160b:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgccac 52
|||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgccac 26
>54947_zma-miR160m:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54944_zma-miR160g:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>54405_sbi-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54404_sbi-miR160a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 12 tgcctggctccctgtatgccac 33
>51611_ptc-miR160d:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51608_ptc-miR160a:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51334_pga-miR160:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48830_osa-miR160e:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 25 gggatgtgcctggctccctgtatgcc 50
||||| ||||||||||||||||||||
Sbjct: 5 gggatatgcctggctccctgtatgcc 30
>46936_ath-miR160c:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccac 52
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>54783_vvi-miR160f:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54781_vvi-miR160d:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgcca 40
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 gcctggctccctgtatgccac 52
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48397_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21