miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48831_osa-miR160f:pmrd
Length = 100
Score = 77.8 bits (39), Expect = 2e-15
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 30 ctgcctggctccctgaatgccatctgagaagcacaccaccgtgcctggcgtggctcctgg 89
|||||||||||||||||||||||| ||||||| || | ||| | ||| || ||||||
Sbjct: 10 ctgcctggctccctgaatgccatccgagaagcgtgccgctgtggccggc-tgcttcctgg 68
Query: 90 ttggcattgagggagtcatgcagggtt 116
|||||||||||||||||||||||||||
Sbjct: 69 ttggcattgagggagtcatgcagggtt 95
>50560_osa-miRf11345-akr:pmrd
Length = 78
Score = 61.9 bits (31), Expect = 1e-10
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 32 gcctggctccctgaatgccatctgagaagcacaccaccgtgcctggcgtggctcctggtt 91
|||||||||||||||||||||| ||||||| || | ||| | ||| || ||||||||
Sbjct: 1 gcctggctccctgaatgccatccgagaagcgtgccgctgtggccggc-tgcttcctggtt 59
Query: 92 ggcattgagggagtcatgc 110
|||||||||||||||||||
Sbjct: 60 ggcattgagggagtcatgc 78
>54782_vvi-miR160e:pmrd
Length = 104
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 30 ctgcctggctccctgaatgccatctgagaagc 61
||||||||||||||||||||||||| ||||||
Sbjct: 10 ctgcctggctccctgaatgccatctaagaagc 41
>54779_vvi-miR160b:pmrd
Length = 104
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 30 ctgcctggctccctgaatgccatctgagaagc 61
||||||||||||||||||||||||| ||||||
Sbjct: 10 ctgcctggctccctgaatgccatctaagaagc 41
>54778_vvi-miR160a:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 30 ctgcctggctccctgaatgccatctgagaagc 61
||||||||||||||||||||||||| ||||||
Sbjct: 10 ctgcctggctccctgaatgccatctaagaagc 41
>54409_sbi-miR160f:pmrd
Length = 110
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 75 tggcgtggctcctggttggcattgagggagtcatgcagg 113
||||||| |||| ||||||| ||||||||||||||||||
Sbjct: 50 tggcgtgcctcccggttggcgttgagggagtcatgcagg 88
>54575_smo-miR160b:pmrd
Length = 108
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 29 cctgcctggctccctgaatgccatctgagaagcacacc 66
|||||||||||||||| |||||| ||||||||| ||||
Sbjct: 11 cctgcctggctccctgtatgccacctgagaagcccacc 48
>51612_ptc-miR160e:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 29 cctgcctggctccctgaatgccatct 54
||||||||||||||||||||||||||
Sbjct: 9 cctgcctggctccctgaatgccatct 34
>51613_ptc-miR160f:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 ctgcctggctccctgaatgccatct 54
|||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatct 34
>46864_aqc-miR160a:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgaatgccatctgagaagc 61
|||||||||||||| ||||||||| ||||||
Sbjct: 1 tgcctggctccctggatgccatctaagaagc 31
>54574_smo-miR160a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 ctgcctggctccctgaatgccatctg 55
||||||||||||||| ||||||||||
Sbjct: 10 ctgcctggctccctgtatgccatctg 35
>51365_ppt-miR160g:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 29 cctgcctggctccctgaatgccatctgagaagc 61
||||||||||||| || |||||||||| |||||
Sbjct: 28 cctgcctggctccttgtatgccatctgcgaagc 60
