miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48834_osa-miR162a:pmrd
Length = 171
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1 gcctgggcgcagtggtttatcgatcctttccctgccttgtg 41
|||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7 gcctgggcgcagtggtttatcgatcccttccctgccttgtg 47
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 100 gcgggaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||||||
Sbjct: 132 gcgggaatcgatcgataaacctctgcatcc 161
>48835_osa-miR162b:pmrd
Length = 134
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 1 gcctgggcgcagtggtttatcgatcctttccctgccttgtgct 43
||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9 gcctgggcgcagtggtttatcgatctcttccctgccttgtgct 51
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 103 ggaatcgatcgataaacctctgcatcc 129
||||||||||||||| |||||||||||
Sbjct: 96 ggaatcgatcgataagcctctgcatcc 122
>48836_osa-miR162m:pmrd
Length = 114
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 3 ctgggcgcagtggtttatcgatcctttccctgccttgtgct 43
||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ctgggcgcagtggtttatcgatctcttccctgccttgtgct 41
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 103 ggaatcgatcgataaacctctgcatcc 129
||||||||||||||| |||||||||||
Sbjct: 86 ggaatcgatcgataagcctctgcatcc 112
>54948_zma-miR162b:pmrd
Length = 130
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 3 ctgggcgcagtggtttatcgatcctttccctgccttgtgct 43
||||||||||||||||||||||| |||| |||||||||||
Sbjct: 1 ctgggcgcagtggtttatcgatctcttccttgccttgtgct 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 100 gcgggaatcgatcgataaacctctgcatcc 129
|||||||||| |||||||||||||||||||
Sbjct: 99 gcgggaatcggtcgataaacctctgcatcc 128
>54387_rco-miR162:pmrd
Length = 96
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatcc 93
>48682_llu-miR162:pmrd
Length = 80
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||
Sbjct: 53 gaatcgatcgataaacctctgcatcc 78
>48545_gma-miR162a:pmrd
Length = 102
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||
Sbjct: 66 gaatcgatcgataaacctctgcatcc 91
>48493_ghr-miR162a:pmrd
Length = 148
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||
Sbjct: 87 gaatcgatcgataaacctctgcatcc 112
>48423_cpa-miR162a:pmrd
Length = 109
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||
Sbjct: 73 gaatcgatcgataaacctctgcatcc 98
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 104 gaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatcc 17
>46938_ath-miR162b:pmrd
Length = 111
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatcc 97
>54542_sly-miR162:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 103 ggaatcgatcgataaacctctgcatcc 129
||||||| |||||||||||||||||||
Sbjct: 71 ggaatcggtcgataaacctctgcatcc 97
>54784_vvi-miR162:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
|||||| |||||||||||||||||||
Sbjct: 66 gaatcggtcgataaacctctgcatcc 91
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 30 cgatcgataaacctctgcatcc 9
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 32 cgatcgataaacctctgcatcc 11
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 31 cgatcgataaacctctgcatcc 10
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 31 cgatcgataaacctctgcatcc 10
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 32 cgatcgataaacctctgcatcc 11
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 30 cgatcgataaacctctgcatcc 9
>51618_ptc-miR162c:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatcc 96
>51617_ptc-miR162b:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatcc 96
>51616_ptc-miR162a:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatcc 96
>48707_mtr-miR162d:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
|||||| |||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatcc 85
>48706_mtr-miR162c:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 104 gaatcgatcgataaacctctgcatcc 129
|||||| |||||||||||||||||||
Sbjct: 27 gaatcggtcgataaacctctgcatcc 2
>48705_mtr-miR162b:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
|||||| |||||||||||||||||||
Sbjct: 59 gaatcggtcgataaacctctgcatcc 84
>46937_ath-miR162a:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
|||| |||||||||||||||||||||
Sbjct: 82 gaatagatcgataaacctctgcatcc 107
