miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48841_osa-miR164d:pmrd
Length = 94
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 71 gccgggttgcagcatgtgcgctccttctccagcatggcttc 111
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 54 gccggcttgcagcatgtgcgctccttctccagcatggcttc 94
>54411_sbi-miR164b:pmrd
Length = 111
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 16 ggggcgagcaaaccttgctggagaagcagggcacgtgct 54
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 3 ggggcgagcaaaccgtgctggagaagcagggcacgtgct 41
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 79 gcagcatgtgcgctccttctccagcatggcttctcgcccc 118
|||||| |||||||||||||||| ||||||||||||||||
Sbjct: 70 gcagcacgtgcgctccttctccaacatggcttctcgcccc 109
>51862_ptc-miRf10040-akr:pmrd
Length = 91
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 28 ccttgctggagaagcagggcacgtgc 53
||||||||||||||||||||||||||
Sbjct: 83 ccttgctggagaagcagggcacgtgc 58
>51619_ptc-miR164a:pmrd
Length = 85
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 ccttgctggagaagcagggcacgtgc 53
||||||||||||||||||||||||||
Sbjct: 5 ccttgctggagaagcagggcacgtgc 30
>51621_ptc-miR164c:pmrd
Length = 82
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 cttgctggagaagcagggcacgtgc 53
|||||||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgc 30
>54952_zma-miR164d:pmrd
Length = 216
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 gctggagaagcagggcacgtgc 53
||||||||||||||||||||||
Sbjct: 18 gctggagaagcagggcacgtgc 39
>54949_zma-miR164a:pmrd
Length = 152
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 gctggagaagcagggcacgtgc 53
||||||||||||||||||||||
Sbjct: 17 gctggagaagcagggcacgtgc 38
>54786_vvi-miR164b:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 25 aaaccttgctggagaagcagggcacgtgct 54
||||| ||||||||||||||||||| ||||
Sbjct: 2 aaaccatgctggagaagcagggcacatgct 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 80 cagcatgtgcgctccttctccagcatgg 107
|||||||||| || ||||||||||||||
Sbjct: 32 cagcatgtgccctgcttctccagcatgg 5
>54785_vvi-miR164a:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ccttgctggagaagcagggcacgtgc 53
||||| ||||||||||||||||||||
Sbjct: 5 ccttgttggagaagcagggcacgtgc 30
>51622_ptc-miR164d:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 gctggagaagcagggcacgtgc 53
||||||||||||||||||||||
Sbjct: 9 gctggagaagcagggcacgtgc 30
>48547_gma-miR164:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ccttgctggagaagcagggcacgtgc 53
||||| ||||||||||||||||||||
Sbjct: 5 ccttgttggagaagcagggcacgtgc 30
>48419_cav-miR164:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ccttgctggagaagcagggcacgtgc 53
||||| ||||||||||||||||||||
Sbjct: 5 ccttgttggagaagcagggcacgtgc 30
>54788_vvi-miR164d:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 29 cttgctggagaagcagggcacgtgc 53
|||| ||||||||||||||||||||
Sbjct: 6 cttgatggagaagcagggcacgtgc 30
>51624_ptc-miR164f:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 81 agcatgtgcgctccttctccagcatggct 109
||||||||| || ||||||||||||||||
Sbjct: 31 agcatgtgccctgcttctccagcatggct 3
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 31 tgctggagaagcagggcacgtgct 54
||||||||||||||||||| ||||
Sbjct: 8 tgctggagaagcagggcacatgct 31
>48710_mtr-miR164c:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 29 cttgctggagaagcagggcacgtgc 53
|||| ||||||||||||||||||||
Sbjct: 1 cttgttggagaagcagggcacgtgc 25
>48708_mtr-miR164a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 29 cttgctggagaagcagggcacgtgc 53
|||| ||||||||||||||||||||
Sbjct: 1 cttgttggagaagcagggcacgtgc 25
>46942_ath-miR164c:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 29 cttgctggagaagcagggcacgtgc 53
|||| ||||||||||||||||||||
Sbjct: 6 cttgatggagaagcagggcacgtgc 30
>54956_zma-miR164h:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 4 tggagaagcagggcacgtgc 23
>54955_zma-miR164g:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgc 20
>54954_zma-miR164f:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgc 20
>54953_zma-miR164e:pmrd
Length = 242
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 4 tggagaagcagggcacgtgc 23
>54951_zma-miR164c:pmrd
Length = 270
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgc 37
>54950_zma-miR164b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgc 40
>54787_vvi-miR164c:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30
>54676_tae-miR164b:pmrd
Length = 152
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgc 20
>54414_sbi-miR164e:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgc 22
>54413_sbi-miR164d:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgc 20
>54410_sbi-miR164:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgc 20
>53142_ptc-miRf11320-akr:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 15 tggagaagcagggcacgtgc 34
>52901_ptc-miRf11079-akr:pmrd
Length = 171
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 15 tggagaagcagggcacgtgc 34
>51623_ptc-miR164e:pmrd
Length = 155
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30
>51620_ptc-miR164b:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30
>51348_ppl-miR164:pmrd
Length = 159
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30
>50414_osa-miRf11199-akr:pmrd
Length = 146
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 13 tggagaagcagggcacgtgc 32
>48843_osa-miR164f:pmrd
Length = 210
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 24 tggagaagcagggcacgtgc 43
>48839_osa-miR164b:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 9 tggagaagcagggcacgtgc 28
>48838_osa-miR164a:pmrd
Length = 156
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 17 tggagaagcagggcacgtgc 36
>48709_mtr-miR164b:pmrd
Length = 144
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 6 tggagaagcagggcacgtgc 25
>48473_csi-miR164:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgc 20
>48398_bra-miR164a:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 10 tggagaagcagggcacgtgc 29
>48341_bna-miR164:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 7 tggagaagcagggcacgtgc 26
>47540_ath-miRf10440-akr:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 95 tggagaagcagggcacgtgc 76
>47539_ath-miRf10439-akr:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 96 tggagaagcagggcacgtgc 77
>47347_ath-miRf10247-akr:pmrd
Length = 159
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 6 tggagaagcagggcacgtgc 25
>46941_ath-miR164b:pmrd
Length = 153
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgc 22
>46940_ath-miR164a:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tggagaagcagggcacgtgc 53
||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgc 38
