miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48311_bdi-miR171a:pmrd
Length = 120
Score = 238 bits (120), Expect = 8e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 gaggtaggaggcggagcggaggaaaggcttcccgaccgggggaagctggtgattgagccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggtaggaggcggagcggaggaaaggcttcccgaccgggggaagctggtgattgagccg 60
Query: 61 cgccaatatctctcgcgcgccagtggaattgccggcttcagctgctttcgccgccgcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgccaatatctctcgcgcgccagtggaattgccggcttcagctgctttcgccgccgcagc 120
>48313_bdi-miR171d:pmrd
Length = 107
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 gaggtaggaggcggagcggaggaaaggcttcccgaccgggggaagctggtgattgagccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 gaggtaggaggcggagcggaggaaaggcttcccgaccgggggaagctggtgattgagccg 91
Query: 61 cgccaatatctctcgc 76
||||||||||||||||
Sbjct: 92 cgccaatatctctcgc 107
>54451_sbi-miR170:pmrd
Length = 55
Score = 93.7 bits (47), Expect = 3e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 16 gcggaggaaaggcttcccgaccgggggaagctggtgattgagccgcgccaatatc 70
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggaggaacggcttcccgagcgggggaagctggtgattgagccgcgccaatatc 55
>54640_sof-miR171b:pmrd
Length = 201
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctctcgcgcgccagtgga 87
||||||| ||||||||||||||| ||||||||||||||
Sbjct: 1 tgattgacccgcgccaatatctcgcgcgcgccagtgga 38
>51342_ppd-miR170:pmrd
Length = 297
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 agctggtgattgagccgcgccaatatc 70
|||||||||||||||||||||||||||
Sbjct: 271 agctggtgattgagccgcgccaatatc 297
>48484_gcl-miR171:pmrd
Length = 205
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 agctggtgattgagccgcgccaatatc 70
|||||||||||||||||||||||||||
Sbjct: 179 agctggtgattgagccgcgccaatatc 205
>46849_ace-miR170c:pmrd
Length = 55
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctctcgcgc 78
||||||||||||||||||||||| |||||
Sbjct: 1 tgattgagccgcgccaatatctcacgcgc 29
>48895_osa-miR171a:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctct 73
||||||||||||||||||||||||
Sbjct: 67 tgattgagccgcgccaatatctct 90
>48569_gma-miR171m:pmrd
Length = 172
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tggtgattgagccgcgccaatatc 70
||||||||||||||||||||||||
Sbjct: 149 tggtgattgagccgcgccaatatc 172
>46976_ath-miR170n:pmrd
Length = 172
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tggtgattgagccgcgccaatatc 70
||||||||||||||||||||||||
Sbjct: 149 tggtgattgagccgcgccaatatc 172
>46851_ace-miR171a:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctctcgcgcgcc 81
||||||||||||||||||||||| || |||||
Sbjct: 1 tgattgagccgcgccaatatctcacgggcgcc 32
>46847_ace-miR170a:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctctcgcgcgcc 81
||||||||||||||||||||||| || |||||
Sbjct: 1 tgattgagccgcgccaatatctcacgggcgcc 32
>55027_zma-miR170p:pmrd
Length = 62
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 ggtgattgagccgcgccaatatc 70
|||||||||||||||||||||||
Sbjct: 40 ggtgattgagccgcgccaatatc 62
>48407_bra-miR171e:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctc 72
|||||||||||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatctc 106
>48369_bna-miR171g:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctc 72
|||||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatctc 100
>48368_bna-miR171f:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctc 72
|||||||||||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatctc 106
>46977_ath-miR171a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctc 72
|||||||||||||||||||||||
Sbjct: 88 tgattgagccgcgccaatatctc 110
>48636_gra-miR171:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctctcgcgcg 79
||||||||||||||||||||| || |||||
Sbjct: 1 tgattgagccgcgccaatatcccttgcgcg 30
>46982_ath-miR171o:pmrd
Length = 339
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 gtgattgagccgcgccaatatc 70
||||||||||||||||||||||
Sbjct: 318 gtgattgagccgcgccaatatc 339
>46981_ath-miR171n:pmrd
Length = 461
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatctctcgcgcg 79
||||||||||||||||||||| || |||||
Sbjct: 1 tgattgagccgcgccaatatcccttgcgcg 30
>55028_zma-miR171a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 79 tgattgagccgcgccaatatc 99
>54910_zel-miR171:pmrd
Length = 65
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatctctcgcgcg 79
|||||||||||||||||||| || |||||
Sbjct: 2 gattgagccgcgccaatatcccttgcgcg 30
>54832_vvi-miR171e:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 70 tgattgagccgcgccaatatc 90
>54667_stu-miR171:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54666_stu-miR170:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54553_sly-miR171c:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98
>54461_sbi-miR171j:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 83 tgattgagccgcgccaatatc 103
>54458_sbi-miR171g:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 57 tgattgagccgcgccaatatc 77
>46980_ath-miR171m:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 72 tgattgagccgcgccaatatc 92
>46975_ath-miR170m:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 72 tgattgagccgcgccaatatc 92
>46853_ace-miR171c:pmrd
Length = 216
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 196 tgattgagccgcgccaatatc 216
>46852_ace-miR171b:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 195 tgattgagccgcgccaatatc 215
>46850_ace-miR170d:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 195 tgattgagccgcgccaatatc 215
>46848_ace-miR170b:pmrd
Length = 76
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgattgagccgcgccaatatc 70
|||||||||||||||||||||
Sbjct: 56 tgattgagccgcgccaatatc 76
>54833_vvi-miR171f:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatc 70
||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatc 90
>54554_sly-miR171d:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatc 70
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>52488_ptc-miRf10666-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatc 70
||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87
>52331_ptc-miRf10509-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatc 70
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>51694_ptc-miR171k:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatc 70
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>51687_ptc-miR171d:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatc 70
||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatc 91
>51686_ptc-miR171c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatc 70
||||||||||||||||||||
Sbjct: 76 gattgagccgcgccaatatc 95
>51383_ppt-miR171b:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatc 70
||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84
>51382_ppt-miR171a:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatc 70
||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatc 83
>48903_osa-miR171i:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatctctc 74
|||||||||||| |||||||||||
Sbjct: 89 gattgagccgcgtcaatatctctc 112
>48497_ghr-miR171:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gattgagccgcgccaatatc 70
||||||||||||||||||||
Sbjct: 66 gattgagccgcgccaatatc 85
