miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48314_bdi-miR172d:pmrd
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 tggagccatcgggtcaaaccggaatgaggccggtgtggcggcgggggcagctgtcgtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggagccatcgggtcaaaccggaatgaggccggtgtggcggcgggggcagctgtcgtggt 60
Query: 61 ggcagttttggagaatcctgatgatgctgcagc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ggcagttttggagaatcctgatgatgctgcagc 93
>48666_hvv-miR172c:pmrd
Length = 137
Score = 109 bits (55), Expect = 4e-25
Identities = 84/93 (90%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 1 tggagccatcgggtcaaaccggaatgaggccggtgtggcggcgggggcagctgtcgtggt 60
||||||||||||||| |||||||||||||||| || ||||||||||||||||| | |
Sbjct: 33 tggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgcc---gc 89
Query: 61 ggcagttttggagaatcctgatgatgctgcagc 93
||| |||||||||||||||||||||||||||||
Sbjct: 90 ggctgttttggagaatcctgatgatgctgcagc 122
>48667_hvv-miR172d:pmrd
Length = 272
Score = 107 bits (54), Expect = 1e-24
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 tggagccatcgggtcaaaccggaatgaggccggtgtggcggcgggggcagctgtcgtggt 60
||||||||||||||| |||||||||||||||| || ||||||||||||||||| | |
Sbjct: 184 tggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgcc---gc 240
Query: 61 ggcagttttggagaatcctgatgatgctgcag 92
||| ||||||||||||||||||||||||||||
Sbjct: 241 ggctgttttggagaatcctgatgatgctgcag 272
>48665_hvv-miR172b:pmrd
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 tggagccatcgggtcaaaccggaatgaggccggtgtggcggcgggggcagctgtcgtggt 60
||||||||||||||| |||||||||||||||| || ||||||||||||||||| | |
Sbjct: 2 tggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgcc---gc 58
Query: 61 ggcagttttggagaatcctgatgatgctgcag 92
||| ||||||||||||||||||||||||||||
Sbjct: 59 ggctgttttggagaatcctgatgatgctgcag 90
>48664_hvv-miR172a:pmrd
Length = 255
Score = 107 bits (54), Expect = 1e-24
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 tggagccatcgggtcaaaccggaatgaggccggtgtggcggcgggggcagctgtcgtggt 60
||||||||||||||| |||||||||||||||| || ||||||||||||||||| | |
Sbjct: 167 tggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgcc---gc 223
Query: 61 ggcagttttggagaatcctgatgatgctgcag 92
||| ||||||||||||||||||||||||||||
Sbjct: 224 ggctgttttggagaatcctgatgatgctgcag 255
>48911_osa-miR172n:pmrd
Length = 62
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tttggagaatcctgatgatgctgcag 92
||||||||||||||||||||||||||
Sbjct: 37 tttggagaatcctgatgatgctgcag 62
>48910_osa-miR172m:pmrd
Length = 297
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tttggagaatcctgatgatgctgcag 92
||||||||||||||||||||||||||
Sbjct: 272 tttggagaatcctgatgatgctgcag 297
>55047_zma-miR172n:pmrd
Length = 81
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 59 gtggcagttttggagaatcctgatgatgctgca 91
||||| || ||||||||||||||||||||||||
Sbjct: 48 gtggcggtgttggagaatcctgatgatgctgca 80
>54684_tae-miR172b:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 agaatcctgatgatgctgcagc 93
||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagc 22
>54683_tae-miR172a:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 agaatcctgatgatgctgcagc 93
||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagc 22
>54641_sof-miR172a:pmrd
Length = 300
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gagaatcctgatgatgctgcag 92
||||||||||||||||||||||
Sbjct: 279 gagaatcctgatgatgctgcag 300
>48913_osa-miR172p:pmrd
Length = 318
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gagaatcctgatgatgctgcag 92
||||||||||||||||||||||
Sbjct: 297 gagaatcctgatgatgctgcag 318
>48912_osa-miR172o:pmrd
Length = 53
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 agaatcctgatgatgctgcagc 93
||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagc 22
>46989_ath-miR172m:pmrd
Length = 141
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 agaatcctgatgatgctgcagc 93
||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagc 22
>55046_zma-miR172m:pmrd
Length = 455
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 agaatcctgatgatgctgcag 92
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>54755_tca-miR172:pmrd
Length = 240
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 agaatcctgatgatgctgcag 92
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>51706_ptc-miR172i:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 gagaatcctgatgatgctgca 91
|||||||||||||||||||||
Sbjct: 96 gagaatcctgatgatgctgca 116
>51549_psi-miR172:pmrd
Length = 68
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 gagaatcctgatgatgctgca 91
|||||||||||||||||||||
Sbjct: 47 gagaatcctgatgatgctgca 67
>51337_pga-miR172:pmrd
Length = 248
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 gagaatcctgatgatgctgca 91
|||||||||||||||||||||
Sbjct: 227 gagaatcctgatgatgctgca 247
