miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48914_osa-miR319a:pmrd
Length = 191
Score = 178 bits (90), Expect = 1e-45
Identities = 157/178 (88%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 7 aagagagctctcttcagtccactctcagatgactgtagggttttattagctgccgattca 66
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 9 aagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatca 68
Query: 67 tccattcacctaccaagaatcatgagggcgtatatgtcttggtagccgactggatggcac 126
||||||||||||||||||| || || || ||| |||||||||| ||||||||| | |
Sbjct: 69 tccattcacctaccaagaaagttgcaggagtgtatctcttggtagcggactggatgacgc 128
Query: 127 gggagctacaa-aaagcttttcgttgtttgtggttggactgaagggtgctcccttgct 183
|||||||| || |||| | || |||||||||||||||||||||||||||||||||
Sbjct: 129 gggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctcccttgct 186
>55049_zma-miR319a:pmrd
Length = 209
Score = 141 bits (71), Expect = 2e-34
Identities = 151/175 (86%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 7 aagagagctctcttcagtccactctcagatgactgtagggttttattagctgccgattca 66
||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||| |||
Sbjct: 19 aagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactca 78
Query: 67 tccattcacctaccaagaatcatgagggcgtatatgtcttggtagccgactggatggcac 126
||||||||||| ||||||| |||| || | |||||||||||||| ||| |||| |
Sbjct: 79 tccattcacctgccaagaaccatggacaggtct-ggtcttggtagccgagtgggtggcgc 137
Query: 127 gggagctacaa-aaagcttttcgttgtttgtggttggactgaagggtgctccctt 180
|||||||| || ||||| | || |||||||||||||||||||||||||||||||
Sbjct: 138 gggagctaaaatcaagctctacgctgtttgtggttggactgaagggtgctccctt 192
>55051_zma-miR319c:pmrd
Length = 216
Score = 111 bits (56), Expect = 2e-25
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 7 aagagagctctcttcagtccactctcagatgactgtagggttttattagctgccgattca 66
||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||| |||
Sbjct: 19 aagagagctctcttcagtccactctaaaatggctgtagggtttcattagctgccgactca 78
Query: 67 tccattcacctaccaagaatcatg 90
||||||||||| ||||||| ||||
Sbjct: 79 tccattcacctgccaagaaccatg 102
>54469_sbi-miR319b:pmrd
Length = 179
Score = 109 bits (55), Expect = 8e-25
Identities = 150/179 (83%), Gaps = 7/179 (3%)
Strand = Plus / Plus
Query: 9 gagagctctcttcagtccactctcagatgactgtagggttttattagctgccgattcatc 68
||||||||||||||||||||||| | ||| |||||| |||| |||||||||||| |||||
Sbjct: 1 gagagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactcatc 60
Query: 69 cattcacctaccaagaatcatg----aggg--cgtatatgtcttggtagccgactggatg 122
||||||||||||||||| |||| || | | | |||||||||||||| ||| ||
Sbjct: 61 cattcacctaccaagaaccatggacaagcgataggtttggtcttggtagccgagtgggtg 120
Query: 123 gcacgggagctacaa-aaagcttttcgttgtttgtggttggactgaagggtgctccctt 180
|| ||||||||| || ||||| | || ||||| |||||||||||||||||||||||||
Sbjct: 121 gcgcgggagctaaaatcaagctctacgctgtttatggttggactgaagggtgctccctt 179
>46884_aqc-miR319:pmrd
Length = 177
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agagagctctcttcagtccactc 30
|||||||||||||||||||||||
Sbjct: 1 agagagctctcttcagtccactc 23
>55052_zma-miR319d:pmrd
Length = 212
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 159 ttggactgaagggtgctccct 179
|||||||||||||||||||||
Sbjct: 174 ttggactgaagggtgctccct 194
>55050_zma-miR319b:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 159 ttggactgaagggtgctccct 179
|||||||||||||||||||||
Sbjct: 175 ttggactgaagggtgctccct 195
>54642_sof-miR319a:pmrd
Length = 539
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 159 ttggactgaagggtgctccct 179
|||||||||||||||||||||
Sbjct: 1 ttggactgaagggtgctccct 21
>54468_sbi-miR319:pmrd
Length = 249
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 159 ttggactgaagggtgctccct 179
|||||||||||||||||||||
Sbjct: 191 ttggactgaagggtgctccct 211
>51709_ptc-miR319c:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 taagagagctctcttcagtccactc 30
|||||||||| ||||||||||||||
Sbjct: 8 taagagagctttcttcagtccactc 32
>51707_ptc-miR319a:pmrd
Length = 188
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 taagagagctctcttcagtccactc 30
|||||||||| ||||||||||||||
Sbjct: 8 taagagagctttcttcagtccactc 32
>48915_osa-miR319b:pmrd
Length = 197
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 159 ttggactgaagggtgctccct 179
|||||||||||||||||||||
Sbjct: 168 ttggactgaagggtgctccct 188
>48572_gma-miR319a:pmrd
Length = 207
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 taagagagctctcttcagtccactc 30
|||||||||| ||||||||||||||
Sbjct: 18 taagagagctttcttcagtccactc 42
>55053_zma-miR319e:pmrd
Length = 173
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 ttggactgaagggtgctccc 178
||||||||||||||||||||
Sbjct: 154 ttggactgaagggtgctccc 173
>54846_vvi-miR319f:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 149 ttgtttgtggttggactgaagggtgctccctt 180
|||| |||| ||||||||||||| ||||||||
Sbjct: 152 ttgtctgtgcttggactgaagggagctccctt 183
>54844_vvi-miR319c:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 aagagagctctcttcagtccactc 30
||||||||| ||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactc 32
>48573_gma-miR319b:pmrd
Length = 208
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 taagagagctctcttcagtccact 29
|||||||||| |||||||||||||
Sbjct: 18 taagagagctttcttcagtccact 41
