miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48315_bdi-miR397:pmrd
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 gaagaggcgcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaggcgcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcg 60
Query: 61 gccggtccggttcggttcaccggcgctgcacacagtgacgcccttgcattctctggcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccggtccggttcggttcaccggcgctgcacacagtgacgcccttgcattctctggcccg 120
Query: 121 attc 124
||||
Sbjct: 121 attc 124
>48334_bdi-miR2508:pmrd
Length = 99
Score = 196 bits (99), Expect = 3e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 9 gcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcggccggtcc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcggccggtcc 60
Query: 69 ggttcggttcaccggcgctgcacacagtgacgcccttgc 107
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttcggttcaccggcgctgcacacagtgacgcccttgc 99
>48959_osa-miR397a:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 caaaggcatcattgagtgcagcgttgatgaaca 42
|||| ||||||||||||||||||||||||||||
Sbjct: 3 caaatgcatcattgagtgcagcgttgatgaaca 35
>48958_osa-miR397a:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 caaaggcatcattgagtgcagcgttgatgaaca 42
|||| ||||||||||||||||||||||||||||
Sbjct: 3 caaatgcatcattgagtgcagcgttgatgaaca 35
>48961_osa-miR397b:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 aaggcatcattgagtgcagcgttgatgaac 41
||||||| ||||||||||||||||||||||
Sbjct: 5 aaggcattattgagtgcagcgttgatgaac 34
>48960_osa-miR397b:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 aaggcatcattgagtgcagcgttgatgaac 41
||||||| ||||||||||||||||||||||
Sbjct: 5 aaggcattattgagtgcagcgttgatgaac 34
>54873_vvi-miR397b:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaa 40
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>54872_vvi-miR397a:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaa 40
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>51741_ptc-miR397a:pmrd
Length = 120
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaa 40
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>48376_bna-miR397b:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatg 38
|||||||||||||||||||||||
Sbjct: 4 catcattgagtgcagcgttgatg 26
>48375_bna-miR397a:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatg 38
|||||||||||||||||||||||
Sbjct: 4 catcattgagtgcagcgttgatg 26
>47010_ath-miR397a:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatg 38
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>54748_tae-miR2029:pmrd
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatgaac 41
||||||||||||||||||||||
Sbjct: 1 attgagtgcagcgttgatgaac 22
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 cggttcaccggcgctgcacaca 94
||||||||||||||||||||||
Sbjct: 48 cggttcaccggcgctgcacaca 69
>51742_ptc-miR397b:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 cattgagtgcagcgttgatgaa 40
||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaa 33
>54560_sly-miR397:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 20 attgagtgcagcgttgatga 39
