miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48315_bdi-miR397:pmrd
Length = 124
Score = 246 bits (124), Expect = 8e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 15 gaagaggcgcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcg 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaggcgcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcg 60
Query: 75 gccggtccggttcggttcaccggcgctgcacacagtgacgcccttgcattctctggcccg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccggtccggttcggttcaccggcgctgcacacagtgacgcccttgcattctctggcccg 120
Query: 135 attc 138
||||
Sbjct: 121 attc 124
Score = 246 bits (124), Expect = 8e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 161 gaagaggcgcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaggcgcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcg 60
Query: 221 gccggtccggttcggttcaccggcgctgcacacagtgacgcccttgcattctctggcccg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccggtccggttcggttcaccggcgctgcacacagtgacgcccttgcattctctggcccg 120
Query: 281 attc 284
||||
Sbjct: 121 attc 124
>48334_bdi-miR2508:pmrd
Length = 99
Score = 196 bits (99), Expect = 7e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 23 gcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcggccggtcc 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcggccggtcc 60
Query: 83 ggttcggttcaccggcgctgcacacagtgacgcccttgc 121
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttcggttcaccggcgctgcacacagtgacgcccttgc 99
Score = 196 bits (99), Expect = 7e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 169 gcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcggccggtcc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaaaggcatcattgagtgcagcgttgatgaacaggggccaggcgaccggcggccggtcc 60
Query: 229 ggttcggttcaccggcgctgcacacagtgacgcccttgc 267
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttcggttcaccggcgctgcacacagtgacgcccttgc 99
>48959_osa-miR397a:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 4e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 24 caaaggcatcattgagtgcagcgttgatgaaca 56
|||| ||||||||||||||||||||||||||||
Sbjct: 3 caaatgcatcattgagtgcagcgttgatgaaca 35
Score = 58.0 bits (29), Expect = 4e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 170 caaaggcatcattgagtgcagcgttgatgaaca 202
|||| ||||||||||||||||||||||||||||
Sbjct: 3 caaatgcatcattgagtgcagcgttgatgaaca 35
>48958_osa-miR397a:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 4e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 24 caaaggcatcattgagtgcagcgttgatgaaca 56
|||| ||||||||||||||||||||||||||||
Sbjct: 3 caaatgcatcattgagtgcagcgttgatgaaca 35
Score = 58.0 bits (29), Expect = 4e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 170 caaaggcatcattgagtgcagcgttgatgaaca 202
|||| ||||||||||||||||||||||||||||
Sbjct: 3 caaatgcatcattgagtgcagcgttgatgaaca 35
>48961_osa-miR397b:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 26 aaggcatcattgagtgcagcgttgatgaac 55
||||||| ||||||||||||||||||||||
Sbjct: 5 aaggcattattgagtgcagcgttgatgaac 34
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 172 aaggcatcattgagtgcagcgttgatgaac 201
||||||| ||||||||||||||||||||||
Sbjct: 5 aaggcattattgagtgcagcgttgatgaac 34
>48960_osa-miR397b:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 26 aaggcatcattgagtgcagcgttgatgaac 55
||||||| ||||||||||||||||||||||
Sbjct: 5 aaggcattattgagtgcagcgttgatgaac 34
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 172 aaggcatcattgagtgcagcgttgatgaac 201
||||||| ||||||||||||||||||||||
Sbjct: 5 aaggcattattgagtgcagcgttgatgaac 34
>54873_vvi-miR397b:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatgaa 54
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatgaa 200
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>54872_vvi-miR397a:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatgaa 54
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatgaa 200
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>51741_ptc-miR397a:pmrd
Length = 120
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatgaa 54
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatgaa 200
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>48376_bna-miR397b:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatg 52
|||||||||||||||||||||||
Sbjct: 4 catcattgagtgcagcgttgatg 26
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatg 198
|||||||||||||||||||||||
Sbjct: 4 catcattgagtgcagcgttgatg 26
>48375_bna-miR397a:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatg 52
|||||||||||||||||||||||
Sbjct: 4 catcattgagtgcagcgttgatg 26
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatg 198
|||||||||||||||||||||||
Sbjct: 4 catcattgagtgcagcgttgatg 26
>47010_ath-miR397a:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatg 52
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatg 198
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>54748_tae-miR2029:pmrd
Length = 71
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 attgagtgcagcgttgatgaac 55
||||||||||||||||||||||
Sbjct: 1 attgagtgcagcgttgatgaac 22
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 attgagtgcagcgttgatgaac 201
||||||||||||||||||||||
Sbjct: 1 attgagtgcagcgttgatgaac 22
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 cggttcaccggcgctgcacaca 108
||||||||||||||||||||||
Sbjct: 48 cggttcaccggcgctgcacaca 69
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 233 cggttcaccggcgctgcacaca 254
||||||||||||||||||||||
Sbjct: 48 cggttcaccggcgctgcacaca 69
>51742_ptc-miR397b:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 33 cattgagtgcagcgttgatgaa 54
||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaa 33
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 179 cattgagtgcagcgttgatgaa 200
||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaa 33
>54560_sly-miR397:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 attgagtgcagcgttgatga 53
||||||||||||||||||||
Sbjct: 20 attgagtgcagcgttgatga 39
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 180 attgagtgcagcgttgatga 199
||||||||||||||||||||
Sbjct: 20 attgagtgcagcgttgatga 39
