miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48962_osa-miR398a:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 101 tgtgttctcaggtcacccctttgggtt 127
|||||||||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccctttgggtt 111
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 23 gctgaacccacaggagtgtcactgagaacacaggtgc 59
|||||||||| ||||||| |||||||||||||||||
Sbjct: 1 gctgaacccagaggagtggtactgagaacacaggtgc 37
>54874_vvi-miR398a:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttggg 125
||||||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctttggg 97
>46889_aqc-miR398a:pmrd
Length = 92
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttggg 125
||||||||||||||||||||||||||
Sbjct: 65 ttgtgttctcaggtcacccctttggg 90
>52988_ptc-miRf11166-akr:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 101 tgtgttctcaggtcacccctttggg 125
|||||||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccctttggg 99
>51744_ptc-miR398a:pmrd
Length = 109
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 101 tgtgttctcaggtcacccctttggg 125
|||||||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccctttggg 104
>48391_bol-miR398a:pmrd
Length = 95
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 99 attgtgttctcaggtcacccctttg 123
|||||||||||||||||||||||||
Sbjct: 69 attgtgttctcaggtcacccctttg 93
>48390_bol-miR398a:pmrd
Length = 95
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 99 attgtgttctcaggtcacccctttg 123
|||||||||||||||||||||||||
Sbjct: 69 attgtgttctcaggtcacccctttg 93
>48582_gma-miR398b:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttg 123
||||||||||||||||||||||||
Sbjct: 95 ttgtgttctcaggtcacccctttg 118
>48581_gma-miR398a:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttg 123
||||||||||||||||||||||||
Sbjct: 76 ttgtgttctcaggtcacccctttg 99
>47012_ath-miR398a:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttg 123
||||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctttg 97
>48511_ghr-miR398:pmrd
Length = 67
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctt 121
||||||||||||||||||||||
Sbjct: 46 ttgtgttctcaggtcacccctt 67
>47014_ath-miR398c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 101 tgtgttctcaggtcacccct 120
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>47013_ath-miR398b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 101 tgtgttctcaggtcacccct 120
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
