miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55091_zma-miR399a:pmrd
Length = 123
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 107 ccttgccaaaggagaattgccctgccattcataaccct 144
||||||||||||||||||||||||||||||| ||||||
Sbjct: 81 ccttgccaaaggagaattgccctgccattcacaaccct 118
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 15 gagggtgagaattacagtgcggttctcctctggcacg 51
|||||||||||| ||||||||||||||||||||||||
Sbjct: 7 gagggtgagaatcacagtgcggttctcctctggcacg 43
>54884_vvi-miR399h:pmrd
Length = 90
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 109 ttgccaaaggagaattgccctgccattc 136
||||||||||||||||||||||||||||
Sbjct: 59 ttgccaaaggagaattgccctgccattc 86
>54496_sbi-miR399h:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 16 agggtgagaattacagtgcggttctcctctggcacggagg 55
||||| ||||| |||||||||||||||||||||| |||||
Sbjct: 8 agggtaagaatcacagtgcggttctcctctggcatggagg 47
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattc 136
|||||||||||||||||||||||||||
Sbjct: 93 tgccaaaggagaattgccctgccattc 119
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 110 tgccaaaggagaattgccctgccattca 137
||||||||||||||||||||||||||||
Sbjct: 28 tgccaaaggagaattgccctgccattca 1
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 109 ttgccaaaggagaattgccctgccattc 136
||||||||||||||||||||||||||||
Sbjct: 28 ttgccaaaggagaattgccctgccattc 1
>51753_ptc-miR399g:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattca 137
||||||||||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccattca 92
>51752_ptc-miR399f:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 109 ttgccaaaggagaattgccctgccattc 136
||||||||||||||||||||||||||||
Sbjct: 71 ttgccaaaggagaattgccctgccattc 98
>48965_osa-miR399b:pmrd
Length = 97
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattca 137
||||||||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattca 94
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 gtgagaattacagtgcggttctcctctggca 49
|||||||| |||||||| |||||||||||||
Sbjct: 1 gtgagaatcacagtgcgattctcctctggca 31
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattc 136
|||||||||||||||||||||||||||
Sbjct: 79 tgccaaaggagaattgccctgccattc 105
>54498_sbi-miR399j:pmrd
Length = 93
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 108 cttgccaaaggagaattgccctgcc 132
|||||||||||||||||||||||||
Sbjct: 69 cttgccaaaggagaattgccctgcc 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 agtgcggttctcctctggca 49
||||||||||||||||||||
Sbjct: 1 agtgcggttctcctctggca 20
>48972_osa-miR399i:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 19 gtgagaattacagtgcggttctcctctggcacggagg 55
|||||||| ||||||| |||||||||||||| |||||
Sbjct: 1 gtgagaatcacagtgcagttctcctctggcatggagg 37
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattca 137
|||||||||||| ||||||||||||||
Sbjct: 86 tgccaaaggagagctgccctgccattca 113
>55102_zma-miR399l:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 acagtgcggttctcctctggcacg 51
||||||||||||||||||||||||
Sbjct: 1 acagtgcggttctcctctggcacg 24
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 107 ccttgccaaaggagaattgccctg 130
||||||||||||||||||||||||
Sbjct: 62 ccttgccaaaggagaattgccctg 85
>48966_osa-miR399c:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattca 137
|||||||||||||||||||||| |||||
Sbjct: 80 tgccaaaggagaattgccctgcgattca 107
>55093_zma-miR399c:pmrd
Length = 207
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattc 136
|||||||||||||||||||||| ||||
Sbjct: 168 tgccaaaggagaattgccctgcgattc 194
>54491_sbi-miR399c:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattc 136
|||||||||||||||||||||| ||||
Sbjct: 91 tgccaaaggagaattgccctgcgattc 117
>54489_sbi-miR399a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattc 136
|||||||||||||||||||||| ||||
Sbjct: 98 tgccaaaggagaattgccctgcgattc 124
>48752_mtr-miR399c:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 ttgccaaaggagaattgccctgccatt 135
||||||||||||| |||||||||||||
Sbjct: 79 ttgccaaaggagatttgccctgccatt 105
>48964_osa-miR399a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgc 131
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
>55101_zma-miR399k:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctg 130
|||||||||||||||||||||
Sbjct: 148 tgccaaaggagaattgccctg 168
>54877_vvi-miR399a:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctg 130
|||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctg 87
>54490_sbi-miR399b:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattcat 138
|||||||||||| |||||||||||||||
Sbjct: 84 tgccaaaggagagctgccctgccattcat 112
>55094_zma-miR399d:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 18 ggtgagaattacagtgcggttctcctctggca 49
||||||||| |||||| || ||||||||||||
Sbjct: 5 ggtgagaatcacagtgtggctctcctctggca 36
>48316_bdi-miR399:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgcca 133
||||||||||||||| ||||||||
Sbjct: 73 tgccaaaggagaattaccctgcca 96
