miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48319_bdi-miR444:pmrd
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 cacgcgtccgactagaggcagcaactccataacttgcggaaagcttgttggatgatgacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacgcgtccgactagaggcagcaactccataacttgcggaaagcttgttggatgatgacc 60
Query: 61 atgccaatgattttaccgaagttatgcagttgctgcctcaagcttgctgc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgccaatgattttaccgaagttatgcagttgctgcctcaagcttgctgc 110
>49006_osa-miR444e:pmrd
Length = 140
Score = 111 bits (56), Expect = 1e-25
Identities = 90/100 (90%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 12 ctagaggcagcaactccataacttgcggaaagcttgttggatgatgaccatgccaatgat 71
||||||||| ||||| ||||||||||| || ||||||||||||||| | ||||||||||
Sbjct: 25 ctagaggcaccaactgcataacttgcgagaaacttgttggatgatgatcttgccaatgat 84
Query: 72 tttaccg-aagttatgcagttgctgcctcaagcttgctgc 110
||| ||| ||||||||||||||||||||||||||| ||||
Sbjct: 85 tttgccgcaagttatgcagttgctgcctcaagcttactgc 124
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 15 gaggcagcaactccataacttgcgg 39
|||||||||||| ||||||||||||
Sbjct: 113 gaggcagcaactgcataacttgcgg 89
>54743_tae-miR2024b:pmrd
Length = 142
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctgc 110
|||| |||||||||||||||||||||||||||
Sbjct: 107 aagtcatgcagttgctgcctcaagcttgctgc 138
>54691_tae-miR444:pmrd
Length = 426
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctgc 110
|||| |||||||||||||||||||||||||||
Sbjct: 142 aagtcatgcagttgctgcctcaagcttgctgc 173
>49007_osa-miR444f:pmrd
Length = 154
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctgc 110
||||| |||||||| |||||||||||||||||
Sbjct: 118 aagttgtgcagttgttgcctcaagcttgctgc 149
>48798_oru-miR444:pmrd
Length = 165
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctgc 110
||||| |||||||| |||||||||||||||||
Sbjct: 123 aagttgtgcagttgttgcctcaagcttgctgc 154
>54742_tae-miR2024a:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctg 109
||||| ||||||||||| |||||||||||||
Sbjct: 83 aagttgtgcagttgctgtctcaagcttgctg 113
>55114_zma-miR444a:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 ttgctgcctcaagcttgctgc 110
|||||||||||||||||||||
Sbjct: 1 ttgctgcctcaagcttgctgc 21
>54376_pvi-miR444:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 83 tatgcagttgctgcctcaagcttg 106
||||||||||||||||| ||||||
Sbjct: 38 tatgcagttgctgcctctagcttg 15
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctgc 110
||||| |||||||| || ||||||||||||||
Sbjct: 85 aagttgtgcagttgttgtctcaagcttgctgc 116
