miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54938_zma-miR160a:pmrd
Length = 104
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 48 gtgcatgcctggctccctgtatgccacacatgt 80
|||| ||||||||||||||||||||||||||||
Sbjct: 5 gtgcgtgcctggctccctgtatgccacacatgt 37
>54947_zma-miR160m:pmrd
Length = 81
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccacacatgt 80
||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgt 28
>54945_zma-miR160h:pmrd
Length = 86
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccacacatgt 80
||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgt 28
>54944_zma-miR160g:pmrd
Length = 86
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccacacatgt 80
||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgt 28
>54939_zma-miR160b:pmrd
Length = 121
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccacacatgt 80
||||||||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccacacatgt 48
>54405_sbi-miR160b:pmrd
Length = 82
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccacacatgt 80
||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgt 28
>54404_sbi-miR160a:pmrd
Length = 84
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccacacatgt 80
||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgt 28
>48826_osa-miR160a:pmrd
Length = 88
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccacacatgt 80
||||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccacacatgt 31
>54780_vvi-miR160c:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccacac 76
||||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccacac 34
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgccaca 75
||||||||||||||||||||||||
Sbjct: 11 atgcctggctccctgtatgccaca 34
>51611_ptc-miR160d:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgccaca 75
||||||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgccaca 33
>51608_ptc-miR160a:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgccaca 75
||||||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgccaca 33
>48832_osa-miR160m:pmrd
Length = 82
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccacacatgt 80
|||||||||||||||||||||| |||||
Sbjct: 1 tgcctggctccctgtatgccactcatgt 28
>48827_osa-miR160b:pmrd
Length = 139
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccacacatgt 80
|||||||||||||||||||||| |||||
Sbjct: 30 tgcctggctccctgtatgccactcatgt 57
>54946_zma-miR160i:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgccac 74
|||||||||||||||||||||||
Sbjct: 1 atgcctggctccctgtatgccac 23
>54942_zma-miR160e:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgccac 74
|||||||||||||||||||||||
Sbjct: 8 atgcctggctccctgtatgccac 30
>54941_zma-miR160d:pmrd
Length = 142
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgccac 74
|||||||||||||||||||||||
Sbjct: 20 atgcctggctccctgtatgccac 42
>54781_vvi-miR160d:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catgcctggctccctgtatgcca 73
|||||||||||||||||||||||
Sbjct: 9 catgcctggctccctgtatgcca 31
>54675_tae-miR160:pmrd
Length = 148
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgccac 74
|||||||||||||||||||||||
Sbjct: 21 atgcctggctccctgtatgccac 43
>51334_pga-miR160:pmrd
Length = 80
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccaca 75
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>48829_osa-miR160d:pmrd
Length = 142
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgccac 74
|||||||||||||||||||||||
Sbjct: 7 atgcctggctccctgtatgccac 29
>48635_gra-miR160b:pmrd
Length = 293
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gcatgcctggctccctgtatgcc 72
|||||||||||||||||||||||
Sbjct: 270 gcatgcctggctccctgtatgcc 292
>48634_gra-miR160a:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gcatgcctggctccctgtatgcc 72
|||||||||||||||||||||||
Sbjct: 83 gcatgcctggctccctgtatgcc 105
>48306_bdi-miR160:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gcatgcctggctccctgtatgcc 72
|||||||||||||||||||||||
Sbjct: 15 gcatgcctggctccctgtatgcc 37
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccaca 75
|||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccaca 27
>46936_ath-miR160c:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgccac 74
|||||||||||||||||||||||
Sbjct: 4 atgcctggctccctgtatgccac 26
>46935_ath-miR160b:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccaca 75
|||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccaca 27
>54940_zma-miR160c:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccac 28
>54783_vvi-miR160f:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgcca 73
||||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcca 31
>54759_ttu-miR160a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>54541_sly-miR160a:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgcca 73
||||||||||||||||||||||
Sbjct: 19 atgcctggctccctgtatgcca 40
>54408_sbi-miR160e:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54407_sbi-miR160d:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54406_sbi-miR160c:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51363_ppt-miR160e:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>48833_osa-miR160n:pmrd
Length = 131
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48828_osa-miR160c:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccac 28
>48791_oba-miR160:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgccac 74
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>48658_hvv-miR160a:pmrd
Length = 344
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgcca 73
||||||||||||||||||||||
Sbjct: 323 atgcctggctccctgtatgcca 344
>48397_bra-miR160a:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgcca 73
||||||||||||||||||||||
Sbjct: 25 atgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgcca 73
||||||||||||||||||||||
Sbjct: 25 atgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgcca 73
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgcca 73
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>54943_zma-miR160f:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgcc 72
|||||||||||||||||||||
Sbjct: 20 atgcctggctccctgtatgcc 40
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgcca 73
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51610_ptc-miR160c:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgcca 73
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgcca 73
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gcctggctccctgtatgccac 74
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48830_osa-miR160e:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 atgcctggctccctgtatgcc 72
|||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcc 30
>48704_mtr-miR160e:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgcca 73
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgcca 73
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgcca 73
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48542_gma-miR160a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgcca 73
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 tgcctggctccctgtatgcca 73
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
