miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48809_osa-miR156i:pmrd
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacacggccgggcggaacggcaccggcggatgtgccgtcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacacggccgggcggaacggcaccggcggatgtgccgtcgc 60
Query: 61 ggccgcgtgctcactgctctgtctgtcatc 90
||||||||||||||||||||||||||||||
Sbjct: 61 ggccgcgtgctcactgctctgtctgtcatc 90
>54399_sbi-miR156g:pmrd
Length = 89
Score = 153 bits (77), Expect = 3e-38
Identities = 87/89 (97%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacggccgggcggaacggcaccggcggatgtgccgtcgcg 61
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacggccgg-cggaacggcaccggcggatgtgccgtcgcg 59
Query: 62 gccgcgtgctcactgctctgtctgtcatc 90
||||||||||||||||||| |||||||||
Sbjct: 60 gccgcgtgctcactgctctatctgtcatc 88
>54919_zma-miR156i:pmrd
Length = 117
Score = 149 bits (75), Expect = 4e-37
Identities = 88/91 (96%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacacggccgggcggaacggcaccggcggat-gtgccgtcg 59
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11 ggtgacagaagagagtgagcacacggccgggcggaacggcaccggcggatggtgccgtcg 70
Query: 60 cggccgcgtgctcactgctctgtctgtcatc 90
||| ||||||||||||||||| |||||||||
Sbjct: 71 cggacgcgtgctcactgctctatctgtcatc 101
>48805_osa-miR156e:pmrd
Length = 104
Score = 139 bits (70), Expect = 4e-34
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacacggccgggcggaacggcaccggcggatgtgccgtcgc 60
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 8 ggtgacagaagagagtgagcacacggccgggcgtgacggcaccggcgggcgtgccgtcgc 67
Query: 61 ggccgcgtgctcactgctctgtctgtcatc 90
|||||||||||||||||||| |||||||||
Sbjct: 68 ggccgcgtgctcactgctctttctgtcatc 97
>54400_sbi-miR156h:pmrd
Length = 94
Score = 123 bits (62), Expect = 2e-29
Identities = 85/92 (92%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacggccgggcggaacggcaccggc---ggatgtgccgtc 58
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacggccgggcgtgacggcaccggtcaaggatgtgccgtc 60
Query: 59 gcggccgcgtgctcactgctctgtctgtcatc 90
|||||||||||||||||||||| |||||||||
Sbjct: 61 gcggccgcgtgctcactgctctttctgtcatc 92
>54915_zma-miR156e:pmrd
Length = 126
Score = 113 bits (57), Expect = 2e-26
Identities = 85/92 (92%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacacggccgggcggaacggcaccggcg--gatgtgccgtc 58
|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 18 ggtgacagaagagagtgagcacacggccggtgtga-cggcaccggcgcggatgtgccgtc 76
Query: 59 gcggccgcgtgctcactgctctgtctgtcatc 90
|||||||||||||||||||||| |||||||||
Sbjct: 77 gcggccgcgtgctcactgctctctctgtcatc 108
>54918_zma-miR156h:pmrd
Length = 115
Score = 97.6 bits (49), Expect = 1e-21
Identities = 79/90 (87%), Gaps = 8/90 (8%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacacggccgggcggaacggcaccggcggatgtgccgtcgc 60
||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 18 ggtgacagaagagagtgagcacacggccgggcgtgacggcac--------gtgccgtcgc 69
Query: 61 ggccgcgtgctcactgctctgtctgtcatc 90
|||||||||||||||||||| |||||||||
Sbjct: 70 ggccgcgtgctcactgctctttctgtcatc 99
>54923_zma-miR156n:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacggc 27
|||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggc 25
>54914_zma-miR156d:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacggc 27
|||||||||||||||||||||||||
Sbjct: 16 tgacagaagagagtgagcacacggc 40
>54402_sbi-miR157:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacggc 27
|||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
>54393_sbi-miR156a:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacggc 27
|||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggc 25
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacacg 25
|||||||||||||||||||||||||
Sbjct: 5 ggtgacagaagagagtgagcacacg 29
>48813_osa-miR156m:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacggc 27
|||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggc 25
>48810_osa-miR156j:pmrd
Length = 165
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacggc 27
|||||||||||||||||||||||||
Sbjct: 42 tgacagaagagagtgagcacacggc 66
>48808_osa-miR156h:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacggc 27
|||||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacacggc 33
>48804_osa-miR156d:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacggc 27
|||||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacacggc 44
>48801_osa-miR156a:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacacg 25
|||||||||||||||||||||||||
Sbjct: 5 ggtgacagaagagagtgagcacacg 29
>54768_vvi-miR156c:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacac 24
||||||||||||||||||||||||
Sbjct: 9 ggtgacagaagagagtgagcacac 32
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacac 24
||||||||||||||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacac 24
>51592_ptc-miR156b:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacac 24
||||||||||||||||||||||||
Sbjct: 9 ggtgacagaagagagtgagcacac 32
>48489_ghr-miR156b:pmrd
Length = 113
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacac 24
||||||||||||||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacac 24
>48488_ghr-miR156a:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacac 24
||||||||||||||||||||||||
Sbjct: 7 ggtgacagaagagagtgagcacac 30
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacac 24
||||||||||||||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacac 24
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacac 24
||||||||||||||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacac 24
>46915_ath-miR156f:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacac 24
||||||||||||||||||||||||
Sbjct: 19 ggtgacagaagagagtgagcacac 42
>46914_ath-miR156e:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggtgacagaagagagtgagcacac 24
||||||||||||||||||||||||
Sbjct: 5 ggtgacagaagagagtgagcacac 28
>54656_stu-miR156a:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacg 25
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacg 23
>54569_smo-miR156a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gacagaagagagtgagcacacgg 26
|||||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacacgg 34
>48491_ghr-miR156d:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacg 25
|||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacacg 31
>48425_cpt-miR156a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacg 25
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacacg 33
>54924_zma-miR156o:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54922_zma-miR156m:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54913_zma-miR156c:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacac 42
>54912_zma-miR156b:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacac 42
>54911_zma-miR156a:pmrd
Length = 152
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 18 tgacagaagagagtgagcacac 39
>54767_vvi-miR156b:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>54401_sbi-miR156i:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>54395_sbi-miR156c:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54394_sbi-miR156b:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 93 tgacagaagagagtgagcacac 72
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 8 tgacagaagagagtgagcacac 29
>51596_ptc-miR156f:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51595_ptc-miR156e:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51594_ptc-miR156d:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51593_ptc-miR156c:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51591_ptc-miR156a:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51357_ppt-miR156c:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcaca 23
||||||||||||||||||||||
Sbjct: 9 gtgacagaagagagtgagcaca 30
>51355_ppt-miR156a:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcaca 23
||||||||||||||||||||||
Sbjct: 20 gtgacagaagagagtgagcaca 41
>51354_ppr-miR156:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 89 tgacagaagagagtgagcacac 68
>48807_osa-miR156g:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacac 25
>48806_osa-miR156f:pmrd
Length = 186
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacac 25
>48803_osa-miR156c:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 29 tgacagaagagagtgagcacac 50
>48802_osa-miR156b:pmrd
Length = 176
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 43 tgacagaagagagtgagcacac 64
>48795_oru-miR156:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>48652_hvv-miR156a:pmrd
Length = 394
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>48336_bna-miR156a:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 gcgtgctcactgctctgtctgtca 88
|||||||||||||||| |||||||
Sbjct: 58 gcgtgctcactgctctttctgtca 81
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 96 tgacagaagagagtgagcacac 75
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 6 tgacagaagagagtgagcacac 27
>46913_ath-miR156d:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 18 tgacagaagagagtgagcacac 39
>46912_ath-miR156c:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 12 tgacagaagagagtgagcacac 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 gcgtgctcactgctctgtctgtca 88
|||||||||||||||| |||||||
Sbjct: 71 gcgtgctcactgctctatctgtca 94
>46910_ath-miR156a:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacac 42
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 gcgtgctcactgctctgtctgtca 88
|||||||||||||||| |||||||
Sbjct: 79 gcgtgctcactgctctttctgtca 102
