miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48810_osa-miR156j:pmrd
Length = 165
Score = 327 bits (165), Expect = 2e-90
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 1 ttggggcggggcgggatcgagcatatgaaaggcgagattgttgacagaagagagtgagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggggcggggcgggatcgagcatatgaaaggcgagattgttgacagaagagagtgagca 60
Query: 61 cacggcgcggcggctagccatcggcgggatgcctgcccccgccgcgtgctcgctcctctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacggcgcggcggctagccatcggcgggatgcctgcccccgccgcgtgctcgctcctctt 120
Query: 121 tctgtcagcatctctcatcactccctcccgcatcccccgccccga 165
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctgtcagcatctctcatcactccctcccgcatcccccgccccga 165
>48808_osa-miR156h:pmrd
Length = 101
Score = 200 bits (101), Expect = 2e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 34 gagattgttgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcc 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagattgttgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcc 60
Query: 94 tgcccccgccgcgtgctcgctcctctttctgtcagcatctc 134
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcccccgccgcgtgctcgctcctctttctgtcagcatctc 101
>48813_osa-miR156m:pmrd
Length = 86
Score = 170 bits (86), Expect = 2e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcctgcccccg 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcctgcccccg 60
Query: 102 ccgcgtgctcgctcctctttctgtca 127
||||||||||||||||||||||||||
Sbjct: 61 ccgcgtgctcgctcctctttctgtca 86
>48817_osa-miR156q:pmrd
Length = 243
Score = 91.7 bits (46), Expect = 2e-19
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 ttggggcggggcgggatcgagcatatgaaaggcg-agattgttgacagaagagagtgagc 59
|||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct: 182 ttggggcggggcgggatcgatcatatgaaaggcgtagattgttgacagaacagagtgagc 241
Query: 60 ac 61
||
Sbjct: 242 ac 243
>54397_sbi-miR156e:pmrd
Length = 123
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 97 ccccgccgcgtgctcgctcctctttctgtcagcatctctc 136
|||||||||||||||||| |||||||||||||| ||||||
Sbjct: 74 ccccgccgcgtgctcgcttctctttctgtcagcctctctc 113
>54921_zma-miR156k:pmrd
Length = 123
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 97 ccccgccgcgtgctcgctcctctttctgtcagcatctc 134
|||||||||||||||||| |||||||||||||| ||||
Sbjct: 74 ccccgccgcgtgctcgcttctctttctgtcagcctctc 111
>54914_zma-miR156d:pmrd
Length = 119
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 ttgacagaagagagtgagcacacggcgcg 69
|||||||||||||||||||||||||||||
Sbjct: 15 ttgacagaagagagtgagcacacggcgcg 43
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 cgccgcgtgctcgctcctctttctgtcagc 129
|||||||||||| || ||||||||||||||
Sbjct: 72 cgccgcgtgctcacttctctttctgtcagc 101
>54402_sbi-miR157:pmrd
Length = 86
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 ttgacagaagagagtgagcacacggcgcg 69
|||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacacggcgcg 29
>54923_zma-miR156n:pmrd
Length = 84
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacggcgcg 69
||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggcgcg 28
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 100 cgccgcgtgctcgctcctctttctgtca 127
|||||||||||| || ||||||||||||
Sbjct: 57 cgccgcgtgctcacttctctttctgtca 84
>54393_sbi-miR156a:pmrd
Length = 84
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacggcgcg 69
||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggcgcg 28
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 100 cgccgcgtgctcgctcctctttctgtca 127
|||||||||||| || ||||||||||||
Sbjct: 57 cgccgcgtgctcacttctctttctgtca 84
>48804_osa-miR156d:pmrd
Length = 129
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 ttgacagaagagagtgagcacacggcg 67
|||||||||||||||||||||||||||
Sbjct: 19 ttgacagaagagagtgagcacacggcg 45
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 100 cgccgcgtgctcgctcctctttctgtca 127
|||||||||||| |||||||||||||||
Sbjct: 76 cgccgcgtgctcactcctctttctgtca 103
>54919_zma-miR156i:pmrd
Length = 117
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacggc 66
|||||||||||||||||||||||||
Sbjct: 13 tgacagaagagagtgagcacacggc 37
>54918_zma-miR156h:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacggc 66
|||||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacacggc 44
>54915_zma-miR156e:pmrd
Length = 126
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacggc 66
|||||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacacggc 44
>54400_sbi-miR156h:pmrd
Length = 94
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacggc 66
|||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
>54399_sbi-miR156g:pmrd
Length = 89
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacggc 66
|||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
>48809_osa-miR156i:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacggc 66
|||||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacacggc 27
>48805_osa-miR156e:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacggc 66
|||||||||||||||||||||||||
Sbjct: 10 tgacagaagagagtgagcacacggc 34
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 40 gttgacagaagagagtgagcacac 63
||||||||||||||||||||||||
Sbjct: 95 gttgacagaagagagtgagcacac 72
>51594_ptc-miR156d:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 gttgacagaagagagtgagcacac 63
||||||||||||||||||||||||
Sbjct: 9 gttgacagaagagagtgagcacac 32
>48806_osa-miR156f:pmrd
Length = 186
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 gttgacagaagagagtgagcacac 63
||||||||||||||||||||||||
Sbjct: 2 gttgacagaagagagtgagcacac 25
>48491_ghr-miR156d:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 ttgacagaagagagtgagcacacg 64
||||||||||||||||||||||||
Sbjct: 8 ttgacagaagagagtgagcacacg 31
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 gttgacagaagagagtgagcacac 63
||||||||||||||||||||||||
Sbjct: 4 gttgacagaagagagtgagcacac 27
>46913_ath-miR156d:pmrd
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 gttgacagaagagagtgagcacac 63
||||||||||||||||||||||||
Sbjct: 16 gttgacagaagagagtgagcacac 39
>54912_zma-miR156b:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ttgacagaagagagtgagcacac 63
|||||||||||||||||||||||
Sbjct: 20 ttgacagaagagagtgagcacac 42
>54656_stu-miR156a:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacg 64
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacg 23
>54569_smo-miR156a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 gacagaagagagtgagcacacgg 65
|||||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacacgg 34
>51595_ptc-miR156e:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ttgacagaagagagtgagcacac 63
|||||||||||||||||||||||
Sbjct: 10 ttgacagaagagagtgagcacac 32
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacg 64
|||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacacg 29
>48801_osa-miR156a:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacg 64
|||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacacg 29
>48425_cpt-miR156a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacacg 64
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacacg 33
>54924_zma-miR156o:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54922_zma-miR156m:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54913_zma-miR156c:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacac 42
>54911_zma-miR156a:pmrd
Length = 152
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 18 tgacagaagagagtgagcacac 39
>54768_vvi-miR156c:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>54767_vvi-miR156b:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>54758_tre-miR156:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 ttgacagaagagagtgagcaca 62
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>54401_sbi-miR156i:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>54395_sbi-miR156c:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54394_sbi-miR156b:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 8 tgacagaagagagtgagcacac 29
>51596_ptc-miR156f:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51593_ptc-miR156c:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51592_ptc-miR156b:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51591_ptc-miR156a:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51354_ppr-miR156:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 89 tgacagaagagagtgagcacac 68
>48807_osa-miR156g:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacac 25
>48803_osa-miR156c:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 29 tgacagaagagagtgagcacac 50
>48802_osa-miR156b:pmrd
Length = 176
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 43 tgacagaagagagtgagcacac 64
>48795_oru-miR156:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>48652_hvv-miR156a:pmrd
Length = 394
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>48489_ghr-miR156b:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>48488_ghr-miR156a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacac 30
>48336_bna-miR156a:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 96 tgacagaagagagtgagcacac 75
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>46915_ath-miR156f:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacac 42
>46914_ath-miR156e:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacac 28
>46912_ath-miR156c:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 12 tgacagaagagagtgagcacac 33
>46910_ath-miR156a:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tgacagaagagagtgagcacac 63
||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacac 42
