miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48812_osa-miR156l:pmrd
Length = 156
Score = 238 bits (120), Expect = 1e-63
Identities = 144/156 (92%)
Strand = Plus / Plus
Query: 1 gctagggagccgacagaagagagtgagcatatatagttctttccttgcatatgtggtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctagggagccgacagaagagagtgagcatatatagttctttccttgcatatgtggtcat 60
Query: 61 atgtgtgttgactgaagagatacatatatatnnnnnnnnnnnnttcatgtgcttgaagct 120
||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61 atgtgtgttgactgaagagatacatatatatagagagagagagttcatgtgcttgaagct 120
Query: 121 atatgtgctcacttctctttctgtcagcaaattatc 156
||||||||||||||||||||||||||||||||||||
Sbjct: 121 atatgtgctcacttctctttctgtcagcaaattatc 156
>48803_osa-miR156c:pmrd
Length = 149
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcacttctctttctgtcagc 148
||||||||||||| ||||||||||||||| |||||||||
Sbjct: 83 tgcttgaagctatgtgtgctcacttctctctctgtcagc 121
>51354_ppr-miR156:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcacttctctttctgtcag 147
||||||||||||| ||||||||||||||| ||||||||
Sbjct: 66 tgcttgaagctatgtgtgctcacttctctctctgtcag 103
>48795_oru-miR156:pmrd
Length = 93
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcacttctctttctgtcag 147
||||||||||||| ||||||||||||||| ||||||||
Sbjct: 56 tgcttgaagctatgtgtgctcacttctctctctgtcag 93
>54917_zma-miR156g:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
||||||||||||||||||||||||
Sbjct: 97 gtgctcacttctctttctgtcagc 120
>54916_zma-miR156f:pmrd
Length = 167
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
||||||||||||||||||||||||
Sbjct: 129 gtgctcacttctctttctgtcagc 152
>54914_zma-miR156d:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
||||||||||||||||||||||||
Sbjct: 78 gtgctcacttctctttctgtcagc 101
>54398_sbi-miR156f:pmrd
Length = 128
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
||||||||||||||||||||||||
Sbjct: 103 gtgctcacttctctttctgtcagc 126
>48806_osa-miR156f:pmrd
Length = 186
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
||||||||||||||||||||||||
Sbjct: 162 gtgctcacttctctttctgtcagc 185
>54923_zma-miR156n:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtca 146
||||||||||||||||||||||
Sbjct: 63 gtgctcacttctctttctgtca 84
>54393_sbi-miR156a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtca 146
||||||||||||||||||||||
Sbjct: 63 gtgctcacttctctttctgtca 84
>54927_zma-miR156r:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcacttctctttctgtca 146
|||| |||||||| |||||||||||||| |||||||
Sbjct: 63 tgctcgaagctatgcgtgctcacttctctctctgtca 99
>54924_zma-miR156o:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcacttctctttctgtca 146
|||| |||||||| |||||||||||||| |||||||
Sbjct: 63 tgctcgaagctatgcgtgctcacttctctctctgtca 99
>54395_sbi-miR156c:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcacttctctttctgtca 146
|||| |||||||| |||||||||||||| |||||||
Sbjct: 59 tgctcgaagctatgcgtgctcacttctctctctgtca 95
>54921_zma-miR156k:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
|||||| |||||||||||||||||
Sbjct: 83 gtgctcgcttctctttctgtcagc 106
>54769_vvi-miR156d:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
|||||||| |||||||||||||||
Sbjct: 70 gtgctcacctctctttctgtcagc 93
>54767_vvi-miR156b:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
||||||| ||||||||||||||||
Sbjct: 69 gtgctcatttctctttctgtcagc 92
>54397_sbi-miR156e:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
|||||| |||||||||||||||||
Sbjct: 83 gtgctcgcttctctttctgtcagc 106
>51593_ptc-miR156c:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
||||||||||||| ||||||||||
Sbjct: 71 gtgctcacttctcattctgtcagc 94
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 5e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 12 gacagaagagagtgagcatatatagttctttccttgcata 51
|||||||||||||||||| | | ||| ||||||||||||
Sbjct: 8 gacagaagagagtgagcacacgtggttgtttccttgcata 47
>48807_osa-miR156g:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
|||||||||||||| |||||||||
Sbjct: 92 gtgctcacttctctctctgtcagc 115
>48801_osa-miR156a:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 5e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 12 gacagaagagagtgagcatatatagttctttccttgcata 51
|||||||||||||||||| | | ||| ||||||||||||
Sbjct: 8 gacagaagagagtgagcacacgtggttgtttccttgcata 47
>48528_gma-miR156a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcagc 148
|||||||||||||| |||||||||
Sbjct: 82 gtgctcacttctctatctgtcagc 105
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcact 133
||||||||||||| ||||||||||
Sbjct: 57 tgcttgaagctatgtgtgctcact 80
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcact 133
||||||||||||| ||||||||||
Sbjct: 57 tgcttgaagctatgtgtgctcact 80
>46915_ath-miR156f:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcact 133
||||||||||||| ||||||||||
Sbjct: 75 tgcttgaagctatgtgtgctcact 98
