miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48819_osa-miR159a:pmrd
Length = 272
Score = 539 bits (272), Expect = e-154
Identities = 272/272 (100%)
Strand = Plus / Plus
Query: 1 gttgtggacgttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgtggacgttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagct 60
Query: 61 gctgggtcatggatcccgttagcctactccatgttcatcattcagctcgagatctgaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgggtcatggatcccgttagcctactccatgttcatcattcagctcgagatctgaaag 120
Query: 121 aaactactccaatttatactaatagtatgtgtgtagataggaaaatgatggagtactcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaactactccaatttatactaatagtatgtgtgtagataggaaaatgatggagtactcgt 180
Query: 181 tgttgggataggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgggataggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccct 240
Query: 241 ctttggattgaagggagctctgcatcttttgt 272
||||||||||||||||||||||||||||||||
Sbjct: 241 ctttggattgaagggagctctgcatcttttgt 272
>48796_oru-miR159:pmrd
Length = 274
Score = 539 bits (272), Expect = e-154
Identities = 272/272 (100%)
Strand = Plus / Plus
Query: 1 gttgtggacgttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgtggacgttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagct 60
Query: 61 gctgggtcatggatcccgttagcctactccatgttcatcattcagctcgagatctgaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgggtcatggatcccgttagcctactccatgttcatcattcagctcgagatctgaaag 120
Query: 121 aaactactccaatttatactaatagtatgtgtgtagataggaaaatgatggagtactcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaactactccaatttatactaatagtatgtgtgtagataggaaaatgatggagtactcgt 180
Query: 181 tgttgggataggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgggataggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccct 240
Query: 241 ctttggattgaagggagctctgcatcttttgt 272
||||||||||||||||||||||||||||||||
Sbjct: 241 ctttggattgaagggagctctgcatcttttgt 272
>54674_tae-miR159b:pmrd
Length = 255
Score = 505 bits (255), Expect = e-144
Identities = 255/255 (100%)
Strand = Plus / Plus
Query: 13 gagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagctgctgggtcatgg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagctgctgggtcatgg 60
Query: 73 atcccgttagcctactccatgttcatcattcagctcgagatctgaaagaaactactccaa 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcccgttagcctactccatgttcatcattcagctcgagatctgaaagaaactactccaa 120
Query: 133 tttatactaatagtatgtgtgtagataggaaaatgatggagtactcgttgttgggatagg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttatactaatagtatgtgtgtagataggaaaatgatggagtactcgttgttgggatagg 180
Query: 193 cttatggcttgcatgccccaggagctgcatcaaccctacatggaccctctttggattgaa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttatggcttgcatgccccaggagctgcatcaaccctacatggaccctctttggattgaa 240
Query: 253 gggagctctgcatct 267
|||||||||||||||
Sbjct: 241 gggagctctgcatct 255
>48825_osa-miR159m:pmrd
Length = 249
Score = 464 bits (234), Expect = e-131
Identities = 248/252 (98%), Gaps = 3/252 (1%)
Strand = Plus / Plus
Query: 11 ttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagctgctgggtcat 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagctgctgggtcat 60
Query: 71 ggatcccgttagcctactccatgttcatcattcagctcgagatctgaaagaaactactcc 130
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggatcccgttagactactccatgttcatcattcagctcgagatctgaaagaaactactcc 120
Query: 131 aatttatactaatagtatgtgtgtagataggaaaatgatggagtactcgttgttgggata 190
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 121 aatttatactaatagtatgtgtgtagataggaaaatgatggagtactc---gttgggata 177
Query: 191 ggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccctctttggattg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccctctttggattg 237
Query: 251 aagggagctctg 262
||||||||||||
Sbjct: 238 aagggagctctg 249
>48820_osa-miR159b:pmrd
Length = 188
Score = 60.0 bits (30), Expect = 9e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 239 ctctttggattgaagggagctctgcatctt 268
||||||||||||||||||||||||||||||
Sbjct: 155 ctctttggattgaagggagctctgcatctt 184
>54930_zma-miR159a:pmrd
Length = 246
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 239 ctctttggattgaagggagctctgcatc 266
||||||||||||||||||||||||||||
Sbjct: 204 ctctttggattgaagggagctctgcatc 231
>54631_sof-miR159d:pmrd
Length = 265
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 239 ctctttggattgaagggagctctgcatc 266
||||||||||||||||||||||||||||
Sbjct: 223 ctctttggattgaagggagctctgcatc 250
>54629_sof-miR159b:pmrd
Length = 266
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 239 ctctttggattgaagggagctctgcatc 266
||||||||||||||||||||||||||||
Sbjct: 224 ctctttggattgaagggagctctgcatc 251
>54628_sof-miR159a:pmrd
Length = 265
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 239 ctctttggattgaagggagctctgcatc 266
||||||||||||||||||||||||||||
Sbjct: 223 ctctttggattgaagggagctctgcatc 250
>54931_zma-miR159b:pmrd
Length = 221
Score = 54.0 bits (27), Expect = 6e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctctgcatctt 268
|||||||||||||||||||||||||||
Sbjct: 182 tttggattgaagggagctctgcatctt 208
>48656_hvv-miR159a:pmrd
Length = 303
Score = 54.0 bits (27), Expect = 6e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctctgcatctt 268
|||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatctt 27
>54937_zma-miR159m:pmrd
Length = 457
Score = 50.1 bits (25), Expect = 9e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctctgcatc 266
|||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatc 25
>54653_spr-miR159:pmrd
Length = 392
Score = 50.1 bits (25), Expect = 9e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctctgcatc 266
|||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatc 25
>51338_pgl-miR159:pmrd
Length = 226
Score = 50.1 bits (25), Expect = 9e-07
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 187 gataggcttatggcttgcatgccccaggagctgcatcaaccc-tacatggaccctctttg 245
||||||||| ||||||||||| || |||||||||| | ||| | ||| | |||||||
Sbjct: 150 gataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctctttg 209
Query: 246 gattgaagggagctctg 262
|||||||||||||||||
Sbjct: 210 gattgaagggagctctg 226
>54673_tae-miR159a:pmrd
Length = 177
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctctgcat 265
||||||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctctgcat 177
>54392_sar-miR159:pmrd
Length = 175
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 239 ctctttggattgaagggagctctg 262
||||||||||||||||||||||||
Sbjct: 152 ctctttggattgaagggagctctg 175
>46932_ath-miR159b:pmrd
Length = 196
Score = 48.1 bits (24), Expect = 4e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 240 tctttggattgaagggagctctgcatct 267
|||||||||||||||||||||| |||||
Sbjct: 166 tctttggattgaagggagctcttcatct 193
>48701_mtr-miR159c:pmrd
Length = 44
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctctgcatctt 268
|||||||||||||||||||| ||||||
Sbjct: 1 tttggattgaagggagctctacatctt 27
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 240 tctttggattgaagggagctct 261
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 240 tctttggattgaagggagctct 261
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48728_mtr-miR319b:pmrd
Length = 42
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 243 ttggattgaagggagctctgcatctt 268
||||||||||||||||||| ||||||
Sbjct: 1 ttggattgaagggagctctacatctt 26
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 240 tctttggattgaagggagctct 261
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 240 tctttggattgaagggagctct 261
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 240 tctttggattgaagggagctct 261
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 240 tctttggattgaagggagctct 261
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 240 tctttggattgaagggagctct 261
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>54777_vvi-miR159c:pmrd
Length = 190
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 186 ggataggcttatggcttgcatgccccaggagctgcat 222
|||||||||| |||||||||| | ||||||||||||
Sbjct: 103 ggataggcttgtggcttgcatatctcaggagctgcat 139
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctct 261
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 237 ccctctttggattgaagggagctct 261
|||| ||||||||||||||||||||
Sbjct: 144 ccctttttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 237 ccctctttggattgaagggagctct 261
|||| ||||||||||||||||||||
Sbjct: 149 ccctttttggattgaagggagctct 173
>51602_ptc-miR159a:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 237 ccctctttggattgaagggagctct 261
|||| ||||||||||||||||||||
Sbjct: 149 ccctttttggattgaagggagctct 173
>48657_hvv-miR159b:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctctg 262
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctctg 174
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctct 261
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctct 261
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctct 261
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
