miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48820_osa-miR159b:pmrd
Length = 188
Score = 373 bits (188), Expect = e-104
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 ggttatgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttatgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagct 60
Query: 61 gcttgttcatggttcccactattctatctcataggaaaagagataggcttgtggtttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcttgttcatggttcccactattctatctcataggaaaagagataggcttgtggtttgca 120
Query: 121 tgaccaaggagccgaatcaactccttgctgaccactctttggattgaagggagctctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaccaaggagccgaatcaactccttgctgaccactctttggattgaagggagctctgca 180
Query: 181 tcttgatc 188
||||||||
Sbjct: 181 tcttgatc 188
>54673_tae-miR159a:pmrd
Length = 177
Score = 101 bits (51), Expect = 2e-22
Identities = 148/177 (83%), Gaps = 5/177 (2%)
Strand = Plus / Plus
Query: 10 gtggagctcctttcgttccaatgaaaggtttatctgaagggtga-tacagctgcttgttc 68
||||||||||| || |||||||||| ||| || | ||||||| | |||||||| ||||
Sbjct: 1 gtggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttc 60
Query: 69 atggttcccactattctatctc-ataggaaaagag---ataggcttgtggtttgcatgac 124
|||||||||||||| ||||||| |||| ||| ||| | |||| |||||||||||||||
Sbjct: 61 atggttcccactatcctatctccatagaaaacgaggagagaggcctgtggtttgcatgac 120
Query: 125 caaggagccgaatcaactccttgctgaccactctttggattgaagggagctctgcat 181
| |||||||| || | ||| ||||||| || ||||||||||||||||||||||||
Sbjct: 121 cgaggagccgcttcgatccctcgctgaccgctgtttggattgaagggagctctgcat 177
>54930_zma-miR159a:pmrd
Length = 246
Score = 97.6 bits (49), Expect = 3e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 149 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 208
Query: 160 tggattgaagggagctctgcatcttgatc 188
||||||||||||||||||||||| |||||
Sbjct: 209 tggattgaagggagctctgcatcctgatc 237
Score = 56.0 bits (28), Expect = 1e-08
Identities = 74/88 (84%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaaggg-tgatacagctgctt 64
||||| ||||||||| || |||||||||| ||| || |||||| || | | ||||||
Sbjct: 16 tgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctc 75
Query: 65 gttcatggttcccactattctatctcat 92
|||||||||||||||||| |||||||||
Sbjct: 76 gttcatggttcccactatcctatctcat 103
>54628_sof-miR159a:pmrd
Length = 265
Score = 97.6 bits (49), Expect = 3e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 168 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 227
Query: 160 tggattgaagggagctctgcatcttgatc 188
||||||||||||||||||||||| |||||
Sbjct: 228 tggattgaagggagctctgcatcctgatc 256
Score = 61.9 bits (31), Expect = 2e-10
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttg 65
||||| ||||||||| || |||||||||| || |||||||||| | | |||||| |
Sbjct: 16 tgaagcggagctcctatcattccaatgaagggccgttctgaagggttgttccgctgctcg 75
Query: 66 ttcatggttcccactattctatctcat 92
||||||||||||||||| |||||||||
Sbjct: 76 ttcatggttcccactatcctatctcat 102
>48657_hvv-miR159b:pmrd
Length = 174
Score = 97.6 bits (49), Expect = 3e-21
Identities = 145/174 (83%), Gaps = 6/174 (3%)
Strand = Plus / Plus
Query: 11 tggagctcctttcgttccaatgaaaggtttatctgaagggtga-tacagctgcttgttca 69
|||||||||| || |||||||||| ||| || | ||||||| | ||||||||||||||
Sbjct: 1 tggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttca 60
Query: 70 tggttcccactattctatctc-ataggaaaa----gagataggcttgtggtttgcatgac 124
||||||||||||| ||||||| || ||| | ||||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctccattagaacacgaggagataggcttgtggtttgcatgat 120
Query: 125 caaggagccgaatcaactccttgctgaccactctttggattgaagggagctctg 178
| |||||||| || | ||| ||||||| || |||||||||||||||||||||
Sbjct: 121 cgaggagccgcttcgatccctcgctgaccgctgtttggattgaagggagctctg 174
>54629_sof-miR159b:pmrd
Length = 266
Score = 93.7 bits (47), Expect = 5e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 169 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 228
Query: 160 tggattgaagggagctctgcatc 182
|||||||||||||||||||||||
Sbjct: 229 tggattgaagggagctctgcatc 251
Score = 69.9 bits (35), Expect = 7e-13
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttg 65
||||| ||||||||| || |||||||||| || ||||||||||| | | |||||| |
Sbjct: 16 tgaagcggagctcctatcattccaatgaagggccgttctgaagggtggttccgctgctcg 75
Query: 66 ttcatggttcccactattctatctcat 92
||||||||||||||||| |||||||||
Sbjct: 76 ttcatggttcccactatcctatctcat 102
>54392_sar-miR159:pmrd
Length = 175
Score = 83.8 bits (42), Expect = 4e-17
Identities = 145/175 (82%), Gaps = 7/175 (4%)
Strand = Plus / Plus
Query: 11 tggagctcctttcgttccaatgaaaggtttatct-gaaggg-tgatacagctgcttgttc 68
|||||||||| || |||||||||||||| | || |||||| || |||||||||| ||||
Sbjct: 1 tggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttc 60
Query: 69 atggttcccactattctatctca-taggaaaa----gagataggcttgtggtttgcatga 123
|||||||||||||| ||| ||| | |||| ||||||||| ||||| ||||||||
Sbjct: 61 atggttcccactatcctacctccgtttgaaaccagggagataggcctgtggcttgcatga 120
Query: 124 ccaaggagccgaatcaactccttgctgaccactctttggattgaagggagctctg 178
|| |||||||| ||| | ||| |||| || ||||||||||||||||||||||||
Sbjct: 121 ccgaggagccgcatcgtcccctcgctggccgctctttggattgaagggagctctg 175
>54631_sof-miR159d:pmrd
Length = 265
Score = 81.8 bits (41), Expect = 2e-16
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
|||||| ||||||||||||||||||| | |||| | | | | |||||||| || |||||
Sbjct: 168 gagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctt 227
Query: 160 tggattgaagggagctctgcatcttgatc 188
||||||||||||||||||||||| |||||
Sbjct: 228 tggattgaagggagctctgcatcctgatc 256
Score = 61.9 bits (31), Expect = 2e-10
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttg 65
||||| ||||||||| || |||||||||| || |||||||||| | | |||||| |
Sbjct: 16 tgaagcggagctcctatcattccaatgaagggccgttctgaagggttgttccgctgctcg 75
Query: 66 ttcatggttcccactattctatctcat 92
||||||||||||||||| |||||||||
Sbjct: 76 ttcatggttcccactatcctatctcat 102
>51338_pgl-miR159:pmrd
Length = 226
Score = 77.8 bits (39), Expect = 3e-15
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
||||||||||||||| |||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 148 gagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 207
Query: 160 tggattgaagggagctctg 178
|||||||||||||||||||
Sbjct: 208 tggattgaagggagctctg 226
Score = 67.9 bits (34), Expect = 3e-12
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 12 ggagctcctttcgttccaatgaaaggtt-tatctgaagggtgatacagctgcttgttcat 70
||||||||| || ||||||||||||||| | | || || || |||||||||| ||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttcat 61
Query: 71 ggttcccactattctatctcat 92
|||||||||||| |||||||||
Sbjct: 62 ggttcccactatcctatctcat 83
>54632_sof-miR159e:pmrd
Length = 264
Score = 69.9 bits (35), Expect = 7e-13
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttg 65
||||| ||||||||| || |||||||||| || ||||||||||| | | |||||| |
Sbjct: 15 tgaagcggagctcctatcattccaatgaagggccgttctgaagggtggttccgctgctcg 74
Query: 66 ttcatggttcccactattctatctcat 92
||||||||||||||||| |||||||||
Sbjct: 75 ttcatggttcccactatcctatctcat 101
Score = 67.9 bits (34), Expect = 3e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
|||||||||||||||||||||||||| | |||| | | | | |||||||| || |||||
Sbjct: 167 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 226
Query: 160 tggattgaagggagctct 177
||||||||| ||||||||
Sbjct: 227 tggattgaaaggagctct 244
>54931_zma-miR159b:pmrd
Length = 221
Score = 61.9 bits (31), Expect = 2e-10
Identities = 75/87 (86%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactcctt-gctgaccactct 158
||||| |||||||||||||||||||| |||||| | | | | |||| | ||||| || |
Sbjct: 124 gagatgggcttgtggtttgcatgaccgaggagctgca-cgtccccttcgttgaccgctgt 182
Query: 159 ttggattgaagggagctctgcatcttg 185
|||||||||||||||||||||||||||
Sbjct: 183 ttggattgaagggagctctgcatcttg 209
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 41 atctgaagggtgatacagctgcttgttcatggttcccact 80
|||||| ||||| |||||||||| ||||||||||||||||
Sbjct: 51 atctgatgggtggtacagctgctcgttcatggttcccact 90
>48656_hvv-miR159a:pmrd
Length = 303
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctctgcatcttgatc 188
|||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcttgatc 31
>48819_osa-miR159a:pmrd
Length = 272
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 155 ctctttggattgaagggagctctgcatctt 184
||||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatctt 268
>48796_oru-miR159:pmrd
Length = 274
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 155 ctctttggattgaagggagctctgcatctt 184
||||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatctt 268
>54674_tae-miR159b:pmrd
Length = 255
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 155 ctctttggattgaagggagctctgcatct 183
|||||||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgcatct 255
>54934_zma-miR159e:pmrd
Length = 203
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 41 atctgaagggtgatacagctgcttgttcatggttcccact 80
|||||| ||||| |||||||||| ||||||||||||||||
Sbjct: 33 atctgatgggtggtacagctgctcgttcatggttcccact 72
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagc 132
||||| |||||||||||||||||||| ||||||
Sbjct: 123 gagatgggcttgtggtttgcatgaccgaggagc 155
>54937_zma-miR159m:pmrd
Length = 457
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctctgcatcttgatc 188
||||||||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatc 31
>54653_spr-miR159:pmrd
Length = 392
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctctgcatcttgatc 188
||||||||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatc 31
>48825_osa-miR159m:pmrd
Length = 249
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 155 ctctttggattgaagggagctctg 178
||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
>48701_mtr-miR159c:pmrd
Length = 44
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctctgcatcttg 185
|||||||||||||||||||| |||||||
Sbjct: 1 tttggattgaagggagctctacatcttg 28
>46932_ath-miR159b:pmrd
Length = 196
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 156 tctttggattgaagggagctctgcatct 183
|||||||||||||||||||||| |||||
Sbjct: 166 tctttggattgaagggagctcttcatct 193
>48728_mtr-miR319b:pmrd
Length = 42
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctgcatcttg 185
||||||||||||||||||| |||||||
Sbjct: 1 ttggattgaagggagctctacatcttg 27
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 156 tctttggattgaagggagctct 177
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 156 tctttggattgaagggagctct 177
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 156 tctttggattgaagggagctct 177
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 156 tctttggattgaagggagctct 177
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 156 tctttggattgaagggagctct 177
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 156 tctttggattgaagggagctct 177
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 156 tctttggattgaagggagctct 177
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctct 177
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctct 177
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctct 177
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctct 177
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctct 177
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctct 177
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctct 177
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
