miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48822_osa-miR159d:pmrd
Length = 189
Score = 375 bits (189), Expect = e-105
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 1 tgatgtgaggaggagctcctttcgatccaattcaggagaggaagtggtgggatgcagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatgtgaggaggagctcctttcgatccaattcaggagaggaagtggtgggatgcagctg 60
Query: 61 ccggttcatggatacctctgcagttcatgccggtaggcctgcacttgcatgggtttgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggttcatggatacctctgcagttcatgccggtaggcctgcacttgcatgggtttgcat 120
Query: 121 gacctgggagatgaacctgccattgtgttcctctattgattggattgaagggagctccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacctgggagatgaacctgccattgtgttcctctattgattggattgaagggagctccgg 180
Query: 181 ctacaccta 189
|||||||||
Sbjct: 181 ctacaccta 189
>48821_osa-miR159c:pmrd
Length = 197
Score = 214 bits (108), Expect = 2e-56
Identities = 159/177 (89%), Gaps = 8/177 (4%)
Strand = Plus / Plus
Query: 10 gaggagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcat 69
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 10 gaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcat 69
Query: 70 ggatacctctgcagttcatgccgg--------taggcctgcacttgcatgggtttgcatg 121
||||||||||| ||| |||| | | ||||||||||||||||||||||||||||
Sbjct: 70 ggatacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatg 129
Query: 122 acctgggagatgaacctgccattgtgttcctctattgattggattgaagggagctcc 178
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 130 acccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
>48824_osa-miR159f:pmrd
Length = 188
Score = 208 bits (105), Expect = 1e-54
Identities = 151/165 (91%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 73 tacctctgcagttcatgccggtaggcctgcacttgcatgggtttgcatgacctgggagat 132
|||||||||||| |||| | |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 73 tacctctgcagtgcatgtc-gtaggcttgcacttgcatgggtttgcatgacccgggagat 131
Query: 133 gaacctgccattgtgttcctctattgattggattgaagggagctc 177
||||| ||||||| ||||||| || ||||||||||||||||||
Sbjct: 132 gaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>48823_osa-miR159e:pmrd
Length = 191
Score = 186 bits (94), Expect = 4e-48
Identities = 146/162 (90%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 18 cctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatggatacct 77
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 19 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacct 78
Query: 78 ctgcagttca-tgccggtaggcctgcacttgcatgggtttgcatgacctgggagatgaac 136
||| ||| || || ||| ||| | ||| |||||||||||||||| |||||||||||
Sbjct: 79 ctggagtgcagggcaaatagtcctaccctttcatgggtttgcatgactcgggagatgaac 138
Query: 137 ctgccattgtgttcctctattgattggattgaagggagctcc 178
| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 139 ccgccattgtcttcctctattgattggattgaagggagctcc 180
>55054_zma-miR319m:pmrd
Length = 178
Score = 93.7 bits (47), Expect = 5e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
Query: 73 tacctct 79
|||||||
Sbjct: 63 tacctct 69
>54936_zma-miR159g:pmrd
Length = 180
Score = 93.7 bits (47), Expect = 5e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 4 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 63
Query: 73 tacctct 79
|||||||
Sbjct: 64 tacctct 70
>54932_zma-miR159c:pmrd
Length = 217
Score = 93.7 bits (47), Expect = 5e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 23 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 82
Query: 73 tacctct 79
|||||||
Sbjct: 83 tacctct 89
>54933_zma-miR159d:pmrd
Length = 217
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| | ||||||| || ||||||||||||||||||||
Sbjct: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
Query: 73 tacctct 79
|||||||
Sbjct: 83 tacctct 89
>54643_sof-miR319b:pmrd
Length = 176
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
Query: 73 tacctct 79
| |||||
Sbjct: 63 tgcctct 69
Score = 65.9 bits (33), Expect = 1e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 98 cctgcacttgcatgggtttgcatgacctgggagatgaacctgccattgtgttcctctatt 157
||||||||||||||||| ||||||||| |||||||||||| |||| | || | || |
Sbjct: 95 cctgcacttgcatgggtgtgcatgacccgggagatgaacccaccatcatctttccctcgt 154
Query: 158 gattggattgaagggagctcc 178
| |||||||||||||||||||
Sbjct: 155 gcttggattgaagggagctcc 175
>54630_sof-miR159c:pmrd
Length = 238
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
Query: 73 tacctct 79
| |||||
Sbjct: 106 tgcctct 112
Score = 65.9 bits (33), Expect = 1e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 98 cctgcacttgcatgggtttgcatgacctgggagatgaacctgccattgtgttcctctatt 157
||||||||||||||||| ||||||||| |||||||||||| |||| | || | || |
Sbjct: 138 cctgcacttgcatgggtgtgcatgacccgggagatgaacccaccatcatctttccctcgt 197
Query: 158 gattggattgaagggagctcc 178
| |||||||||||||||||||
Sbjct: 198 gcttggattgaagggagctcc 218
>54403_sbi-miR159b:pmrd
Length = 253
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 61 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 120
Query: 73 tacctct 79
| |||||
Sbjct: 121 tgcctct 127
>54935_zma-miR159f:pmrd
Length = 181
Score = 63.9 bits (32), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcagg-agaggaagtggtgggatgcagctgccggttcatgg 71
||||||| ||||||||||| |||| || ||||||| | || |||||||||||||||||||
Sbjct: 4 gagctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttcatgg 63
Query: 72 atac 75
||||
Sbjct: 64 atac 67
Score = 63.9 bits (32), Expect = 4e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 99 ctgcacttgcatgggtttgcatgacctgggagatgaacctgccattgtgttcctctattg 158
|||||||||||||||| ||||||||| ||||||||| || ||||| | || | || ||
Sbjct: 100 ctgcacttgcatgggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtg 159
Query: 159 attggattgaagggagctcc 178
|||||||||||||||||||
Sbjct: 160 cttggattgaagggagctcc 179
>48540_gma-miR159b:pmrd
Length = 186
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 gggtttgcatgacctgggagatga 134
||||||||||| ||||||||||||
Sbjct: 112 gggtttgcatgccctgggagatga 135
