miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48823_osa-miR159e:pmrd
Length = 191
Score = 379 bits (191), Expect = e-106
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 1 gatgaagaagaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgaagaagaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagct 60
Query: 61 gccggttcatggatacctctggagtgcagggcaaatagtcctaccctttcatgggtttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccggttcatggatacctctggagtgcagggcaaatagtcctaccctttcatgggtttgc 120
Query: 121 atgactcgggagatgaacccgccattgtcttcctctattgattggattgaagggagctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgactcgggagatgaacccgccattgtcttcctctattgattggattgaagggagctcc 180
Query: 181 tctagctacat 191
|||||||||||
Sbjct: 181 tctagctacat 191
>48821_osa-miR159c:pmrd
Length = 197
Score = 210 bits (106), Expect = 3e-55
Identities = 154/169 (91%), Gaps = 7/169 (4%)
Strand = Plus / Plus
Query: 19 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacct 78
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 18 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatggatacct 77
Query: 79 ctggagtgcagggca--aa-----tagtcctaccctttcatgggtttgcatgactcggga 131
|||||||||| |||| || ||| ||| | ||| |||||||||||||||| |||||
Sbjct: 78 ctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacccggga 137
Query: 132 gatgaacccgccattgtcttcctctattgattggattgaagggagctcc 180
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
>48822_osa-miR159d:pmrd
Length = 189
Score = 186 bits (94), Expect = 4e-48
Identities = 146/162 (90%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 19 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacct 78
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 18 cctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatggatacct 77
Query: 79 ctggagtgcagggcaaatagtcctaccctttcatgggtttgcatgactcgggagatgaac 138
||| ||| || || ||| ||| | ||| |||||||||||||||| |||||||||||
Sbjct: 78 ctgcagttca-tgccggtaggcctgcacttgcatgggtttgcatgacctgggagatgaac 136
Query: 139 ccgccattgtcttcctctattgattggattgaagggagctcc 180
| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 137 ctgccattgtgttcctctattgattggattgaagggagctcc 178
>48824_osa-miR159f:pmrd
Length = 188
Score = 184 bits (93), Expect = 2e-47
Identities = 157/176 (89%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 4 gaagaagaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgcc 63
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4 gaagaagacgagctccctt-cgatccaatccaggagaggaagtggtaggatgcagctgcc 62
Query: 64 ggttcatggatacctctggagtgcagggcaaatagtcctaccctttcatgggtttgcatg 123
|||||||||||||||||| |||||| | | ||| | | | ||| ||||||||||||||
Sbjct: 63 ggttcatggatacctctgcagtgcatgtc--gtaggcttgcacttgcatgggtttgcatg 120
Query: 124 actcgggagatgaacccgccattgtcttcctctattgattggattgaagggagctc 179
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct: 121 acccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>54936_zma-miR159g:pmrd
Length = 180
Score = 93.7 bits (47), Expect = 5e-20
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||
Sbjct: 1 gaagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttca 59
Query: 70 tggatacctct 80
|||||||||||
Sbjct: 60 tggatacctct 70
>54932_zma-miR159c:pmrd
Length = 217
Score = 93.7 bits (47), Expect = 5e-20
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||
Sbjct: 20 gaagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttca 78
Query: 70 tggatacctct 80
|||||||||||
Sbjct: 79 tggatacctct 89
>55054_zma-miR319m:pmrd
Length = 178
Score = 91.7 bits (46), Expect = 2e-19
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 11 aagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcat 70
|||||||||||| ||||||||| |||||| ||||||||| || |||||||||||||||||
Sbjct: 1 aagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 59
Query: 71 ggatacctct 80
||||||||||
Sbjct: 60 ggatacctct 69
>54630_sof-miR159c:pmrd
Length = 238
Score = 87.7 bits (44), Expect = 3e-18
Identities = 148/180 (82%), Gaps = 7/180 (3%)
Strand = Plus / Plus
Query: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||
Sbjct: 43 gaagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttca 101
Query: 70 tggatacctctggagtgcag----ggcaaatagt--cctaccctttcatgggtttgcatg 123
||||| ||||| |||||| | | ||| | ||| | ||| ||||||| ||||||
Sbjct: 102 tggatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatg 161
Query: 124 actcgggagatgaacccgccattgtcttcctctattgattggattgaagggagctcctct 183
|| |||||||||||||| |||| |||| | || || ||||||||||||||||||||||
Sbjct: 162 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcctct 221
>54933_zma-miR159d:pmrd
Length = 217
Score = 85.7 bits (43), Expect = 1e-17
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
||||||||||||| ||||||||| |||||| | ||||||| || ||||||||||||||||
Sbjct: 20 gaagagctccctt-cgatccaatccaggagggaaagtggtcggctgcagctgccggttca 78
Query: 70 tggatacctct 80
|||||||||||
Sbjct: 79 tggatacctct 89
>54643_sof-miR319b:pmrd
Length = 176
Score = 83.8 bits (42), Expect = 4e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 11 aagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcat 70
|||||||||||| ||||||||| |||||| ||||||||| || |||||||||||||||||
Sbjct: 1 aagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 59
Query: 71 ggatacctct 80
|||| |||||
Sbjct: 60 ggatgcctct 69
>54403_sbi-miR159b:pmrd
Length = 253
Score = 83.8 bits (42), Expect = 4e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 11 aagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcat 70
|||||||||||| ||||||||| |||||| ||||||||| || |||||||||||||||||
Sbjct: 59 aagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 117
Query: 71 ggatacctct 80
|||| |||||
Sbjct: 118 ggatgcctct 127
>54935_zma-miR159f:pmrd
Length = 181
Score = 65.9 bits (33), Expect = 1e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 110 catgggtttgcatgactcgggagatgaacccgccattgtcttcctctattgattggattg 169
||||||| |||||||| |||||||||| |||||||| |||| | || || ||||||||
Sbjct: 109 catgggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattg 168
Query: 170 aagggagctcctc 182
|||||||||||||
Sbjct: 169 aagggagctcctc 181
Score = 63.9 bits (32), Expect = 4e-11
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 10 gaagagctccctttcgatccaattcagg-agaggaagtggtaggatgcagctgccggttc 68
||||||||||||| ||||||||| |||| || ||||||| | || |||||||||||||||
Sbjct: 1 gaagagctccctt-cgatccaatccagggaggggaagtgttcggttgcagctgccggttc 59
Query: 69 atggatac 76
||||||||
Sbjct: 60 atggatac 67
>51605_ptc-miR159d:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 ttggattgaagggagctcct 181
||||||||||||||||||||
Sbjct: 166 ttggattgaagggagctcct 185
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 ttggattgaagggagctcct 181
||||||||||||||||||||
Sbjct: 196 ttggattgaagggagctcct 215
