miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48824_osa-miR159f:pmrd
Length = 188
Score = 373 bits (188), Expect = e-104
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 gaagaagaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaagaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctg 60
Query: 61 ccggttcatggatacctctgcagtgcatgtcgtaggcttgcacttgcatgggtttgcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggttcatggatacctctgcagtgcatgtcgtaggcttgcacttgcatgggtttgcatg 120
Query: 121 acccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctctaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctctaca 180
Query: 181 cctctctc 188
||||||||
Sbjct: 181 cctctctc 188
>48821_osa-miR159c:pmrd
Length = 197
Score = 220 bits (111), Expect = 3e-58
Identities = 170/191 (89%), Gaps = 9/191 (4%)
Strand = Plus / Plus
Query: 7 gaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggtt 66
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgatt 66
Query: 67 catggatacctctgcagtgcatgtc---------gtaggcttgcacttgcatgggtttgc 117
|||||||||||||| |||||||| | |||||| |||||||||||||||||||
Sbjct: 67 catggatacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgc 126
Query: 118 atgacccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctct 177
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 127 atgacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
Query: 178 acacctctctc 188
||| |||||||
Sbjct: 187 acatctctctc 197
>48822_osa-miR159d:pmrd
Length = 189
Score = 208 bits (105), Expect = 1e-54
Identities = 151/165 (91%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 73 tacctctgcagtgcatgtc-gtaggcttgcacttgcatgggtttgcatgacccgggagat 131
|||||||||||| |||| | |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 73 tacctctgcagttcatgccggtaggcctgcacttgcatgggtttgcatgacctgggagat 132
Query: 132 gaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
||||| ||||||| ||||||| || ||||||||||||||||||
Sbjct: 133 gaacctgccattgtgttcctctattgattggattgaagggagctc 177
>48823_osa-miR159e:pmrd
Length = 191
Score = 184 bits (93), Expect = 2e-47
Identities = 157/176 (89%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 4 gaagaagacgagctccctt-cgatccaatccaggagaggaagtggtaggatgcagctgcc 62
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4 gaagaagaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgcc 63
Query: 63 ggttcatggatacctctgcagtgcatgtc--gtaggcttgcacttgcatgggtttgcatg 120
|||||||||||||||||| |||||| | | ||| | | | ||| ||||||||||||||
Sbjct: 64 ggttcatggatacctctggagtgcagggcaaatagtcctaccctttcatgggtttgcatg 123
Query: 121 acccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct: 124 actcgggagatgaacccgccattgtcttcctctattgattggattgaagggagctc 179
>54643_sof-miR319b:pmrd
Length = 176
Score = 131 bits (66), Expect = 2e-31
Identities = 146/172 (84%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
Query: 73 tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124
| ||||| |||| ||| | | ||| ||||||||||||||| ||||||||||
Sbjct: 63 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 122
Query: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
|||||||||||||||||| |||| | || |||||||||||||||||||||
Sbjct: 123 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 174
>54630_sof-miR159c:pmrd
Length = 238
Score = 131 bits (66), Expect = 2e-31
Identities = 146/172 (84%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
Query: 73 tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124
| ||||| |||| ||| | | ||| ||||||||||||||| ||||||||||
Sbjct: 106 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 165
Query: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
|||||||||||||||||| |||| | || |||||||||||||||||||||
Sbjct: 166 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 217
>54403_sbi-miR159b:pmrd
Length = 253
Score = 131 bits (66), Expect = 2e-31
Identities = 146/172 (84%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 61 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 120
Query: 73 tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124
| ||||| |||| ||| | | ||| ||||||||||||||| ||||||||||
Sbjct: 121 tgcctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgaccc 180
Query: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
|||||||||||||||||| |||| | || |||||||||||||||||||||
Sbjct: 181 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
>55054_zma-miR319m:pmrd
Length = 178
Score = 109 bits (55), Expect = 8e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
Query: 73 tacctct 79
|||||||
Sbjct: 63 tacctct 69
>54936_zma-miR159g:pmrd
Length = 180
Score = 109 bits (55), Expect = 8e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 4 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 63
Query: 73 tacctct 79
|||||||
Sbjct: 64 tacctct 70
>54932_zma-miR159c:pmrd
Length = 217
Score = 109 bits (55), Expect = 8e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 23 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 82
Query: 73 tacctct 79
|||||||
Sbjct: 83 tacctct 89
>54933_zma-miR159d:pmrd
Length = 217
Score = 105 bits (53), Expect = 1e-23
Identities = 145/174 (83%), Gaps = 10/174 (5%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
|||||||||||||||||||||||||| | ||||||| || ||||||||||||||||||||
Sbjct: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
Query: 73 tacctctgcagtgc----atgtcgtag--gct----tgcacttgcatgggtttgcatgac 122
||||||| |||| ||| | || ||| ||||||||||||||| ||||||||
Sbjct: 83 tacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatgac 142
Query: 123 ccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
|||||||| ||||| ||||| |||| | || |||||||||||||||||||||
Sbjct: 143 ccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
>54935_zma-miR159f:pmrd
Length = 181
Score = 83.8 bits (42), Expect = 4e-17
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 99 tgcacttgcatgggtttgcatgacccgggagatgaacccaccattgtcttcctcttatgc 158
||||||||||||||| ||||||||||||||||||| ||| |||| |||| | || |||
Sbjct: 101 tgcacttgcatgggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtgc 160
Query: 159 ttggattgaagggagctc 176
||||||||||||||||||
Sbjct: 161 ttggattgaagggagctc 178
Score = 79.8 bits (40), Expect = 7e-16
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccagg-agaggaagtggtaggatgcagctgccggttcatgg 71
|||||||||||||||||||||||| || ||||||| | || |||||||||||||||||||
Sbjct: 4 gagctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttcatgg 63
Query: 72 atac 75
||||
Sbjct: 64 atac 67
>54777_vvi-miR159c:pmrd
Length = 190
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctacacctctctc 188
||||||||||||||||||||||||||||||
Sbjct: 161 ttggattgaagggagctctacacctctctc 190
>48686_ltu-miR159:pmrd
Length = 345
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctacacc 182
||||||||||||||||||||||||
Sbjct: 2 ttggattgaagggagctctacacc 25
>48539_gma-miR159a:pmrd
Length = 214
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctacacc 182
||||||||||||||||||||||||
Sbjct: 176 ttggattgaagggagctctacacc 199
>48728_mtr-miR319b:pmrd
Length = 42
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctaca 180
||||||||||||||||||||||
Sbjct: 1 ttggattgaagggagctctaca 22
>48701_mtr-miR159c:pmrd
Length = 44
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctaca 180
||||||||||||||||||||||
Sbjct: 2 ttggattgaagggagctctaca 23
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctaca 180
||||||||||||||||||||||
Sbjct: 164 ttggattgaagggagctctaca 185
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctaca 180
||||||||||||||||||||||
Sbjct: 162 ttggattgaagggagctctaca 183
>54378_pvu-miR159:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctac 179
|||||||||||||||||||||
Sbjct: 154 ttggattgaagggagctctac 174
>54377_pvu-miR159:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctac 179
|||||||||||||||||||||
Sbjct: 154 ttggattgaagggagctctac 174
>51603_ptc-miR159b:pmrd
Length = 187
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctacacct 183
|||||||||||||||||||| ||||
Sbjct: 159 ttggattgaagggagctctaaacct 183
>46931_ath-miR159a:pmrd
Length = 184
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctac 179
|||||||||||||||||||||
Sbjct: 164 ttggattgaagggagctctac 184
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctcta 178
||||||||||||||||||||
Sbjct: 158 ttggattgaagggagctcta 177
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctcta 178
||||||||||||||||||||
Sbjct: 150 ttggattgaagggagctcta 169
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctcta 178
||||||||||||||||||||
Sbjct: 155 ttggattgaagggagctcta 174
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctcta 178
||||||||||||||||||||
Sbjct: 155 ttggattgaagggagctcta 174
>48699_mtr-miR159a:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctcta 178
||||||||||||||||||||
Sbjct: 149 ttggattgaagggagctcta 168
>46932_ath-miR159b:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctacacctctc 186
||||||||||||||||||| || |||||
Sbjct: 169 ttggattgaagggagctcttcatctctc 196
