miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48828_osa-miR160c:pmrd
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 ggaatgtgcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaatgtgcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggtt 60
Query: 61 gcctatgatggatggcgtgcacggagccaagcatattcc 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcctatgatggatggcgtgcacggagccaagcatattcc 99
>54759_ttu-miR160a:pmrd
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccactcatctagagcaacaaacttctgcga-gaggttgccta 65
||||||||||||||||||||||||||| |||||||| | ||| ||| | |||||||||
Sbjct: 1 tgcctggctccctgtatgccactcatccagagcaac-accttttgcaataaggttgcctg 59
Query: 66 tgatggatggcgtgcacggagccaagca 93
||||||||||||||||||| |||||||
Sbjct: 60 cgatggatggcgtgcacggatccaagca 87
>54940_zma-miR160c:pmrd
Length = 100
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 4 atgtgcctggctccctgtatgccactcatctagagcaac 42
|||||||||||||||||||||||||||||||||||||||
Sbjct: 4 atgtgcctggctccctgtatgccactcatctagagcaac 42
>54406_sbi-miR160c:pmrd
Length = 83
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/87 (86%), Gaps = 4/87 (4%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggttgcctat 66
||||||||||||||||||||||||||||||| |||||| || | ||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcatctagatcaacaa----ctacctatggttgcctat 56
Query: 67 gatggatggcgtgcacggagccaagca 93
||||| |||||||||||| ||||||||
Sbjct: 57 gatggttggcgtgcacggtgccaagca 83
>48827_osa-miR160b:pmrd
Length = 139
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 gtgcctggctccctgtatgccactcat 32
|||||||||||||||||||||||||||
Sbjct: 29 gtgcctggctccctgtatgccactcat 55
>54942_zma-miR160e:pmrd
Length = 94
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 ggaatgtgcctggctccctgtatgccactc 30
||||| ||||||||||||||||||||||||
Sbjct: 3 ggaatatgcctggctccctgtatgccactc 32
>48832_osa-miR160m:pmrd
Length = 82
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccactcat 32
||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcat 26
>48826_osa-miR160a:pmrd
Length = 88
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 5 tgtgcctggctccctgtatgccactcatctagagcaac 42
|||||||||||||||||||||||| ||| |||| ||||
Sbjct: 2 tgtgcctggctccctgtatgccacacatgtagaccaac 39
>48791_oba-miR160:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tgtgcctggctccctgtatgccact 29
|||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccact 26
>54946_zma-miR160i:pmrd
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccactc 30
||||||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgccactc 25
>54941_zma-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccactc 30
||||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccactc 44
>54939_zma-miR160b:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tgtgcctggctccctgtatgccac 28
||||||||||||||||||||||||
Sbjct: 19 tgtgcctggctccctgtatgccac 42
>54780_vvi-miR160c:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tgtgcctggctccctgtatgccac 28
||||||||||||||||||||||||
Sbjct: 9 tgtgcctggctccctgtatgccac 32
>54675_tae-miR160:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccactc 30
||||||||||||||||||||||||
Sbjct: 22 tgcctggctccctgtatgccactc 45
>54408_sbi-miR160e:pmrd
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccactc 30
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>54407_sbi-miR160d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccactc 30
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>51610_ptc-miR160c:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 atgtgcctggctccctgtatgcca 27
||||||||||||||||||||||||
Sbjct: 8 atgtgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 atgtgcctggctccctgtatgcca 27
||||||||||||||||||||||||
Sbjct: 8 atgtgcctggctccctgtatgcca 31
>48833_osa-miR160n:pmrd
Length = 131
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccactc 30
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>48829_osa-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccactc 30
||||||||||||||||||||||||
Sbjct: 8 tgcctggctccctgtatgccactc 31
>48704_mtr-miR160e:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 atgtgcctggctccctgtatgcca 27
||||||||||||||||||||||||
Sbjct: 3 atgtgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 atgtgcctggctccctgtatgcca 27
||||||||||||||||||||||||
Sbjct: 3 atgtgcctggctccctgtatgcca 26
>48542_gma-miR160a:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 atgtgcctggctccctgtatgcca 27
||||||||||||||||||||||||
Sbjct: 18 atgtgcctggctccctgtatgcca 41
>54938_zma-miR160a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcctggctccctgtatgccac 28
|||||||||||||||||||||||
Sbjct: 9 gtgcctggctccctgtatgccac 31
>51363_ppt-miR160e:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccact 29
|||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccact 52
>48703_mtr-miR160d:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tgtgcctggctccctgtatgcca 27
|||||||||||||||||||||||
Sbjct: 4 tgtgcctggctccctgtatgcca 26
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcctggctccctgtatgccac 28
|||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgccac 26
>46935_ath-miR160b:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcctggctccctgtatgccac 28
|||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgccac 26
>54947_zma-miR160m:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54944_zma-miR160g:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54943_zma-miR160f:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ggaatgtgcctggctccctgtatgcc 26
||||| ||||||||||||||||||||
Sbjct: 15 ggaatatgcctggctccctgtatgcc 40
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>54405_sbi-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54404_sbi-miR160a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 12 tgcctggctccctgtatgccac 33
>51611_ptc-miR160d:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51608_ptc-miR160a:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51334_pga-miR160:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>46936_ath-miR160c:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgccac 28
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>54783_vvi-miR160f:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgcca 27
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54781_vvi-miR160d:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgcca 27
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgcca 27
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgcca 27
|||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgcca 40
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 gcctggctccctgtatgccac 28
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48658_hvv-miR160a:pmrd
Length = 344
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgcca 27
|||||||||||||||||||||
Sbjct: 324 tgcctggctccctgtatgcca 344
>48397_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgcca 27
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgcca 27
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgcca 27
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgcca 27
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tgcctggctccctgtatgcca 27
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
