miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48829_osa-miR160d:pmrd
Length = 142
Score = 281 bits (142), Expect = 7e-77
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 1 ggggatatgcctggctccctgtatgccactcgcgtagctgccaaactcagttgaaacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggggatatgcctggctccctgtatgccactcgcgtagctgccaaactcagttgaaacaac 60
Query: 61 tgccttctcccggcgagattcaggcattgtgttcgtacgtttggctctactgcggatggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgccttctcccggcgagattcaggcattgtgttcgtacgtttggctctactgcggatggc 120
Query: 121 gtgcgaggagccaagcatgacc 142
||||||||||||||||||||||
Sbjct: 121 gtgcgaggagccaagcatgacc 142
>48833_osa-miR160n:pmrd
Length = 131
Score = 260 bits (131), Expect = 2e-70
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactcgcgtagctgccaaactcagttgaaacaactgccttc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcgcgtagctgccaaactcagttgaaacaactgccttc 60
Query: 68 tcccggcgagattcaggcattgtgttcgtacgtttggctctactgcggatggcgtgcgag 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcccggcgagattcaggcattgtgttcgtacgtttggctctactgcggatggcgtgcgag 120
Query: 128 gagccaagcat 138
|||||||||||
Sbjct: 121 gagccaagcat 131
>54675_tae-miR160:pmrd
Length = 148
Score = 85.7 bits (43), Expect = 8e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 2 gggatatgcctggctccctgtatgccactcgcgtagctgccaa 44
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 gggatatgcctggctccctgtatgccactcgcgtagctgccaa 58
Score = 75.8 bits (38), Expect = 8e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 101 ttggctctactgcggatggcgtgcgaggagccaagcatgacc 142
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 75 ttggctctaccgcggatggcgtgcgaggagccaagcatgacc 116
>54407_sbi-miR160d:pmrd
Length = 100
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 101 ttggctctactgcggatggcgtgcgaggagccaagca 137
|||||||||||||||||||||||||||||||||||||
Sbjct: 64 ttggctctactgcggatggcgtgcgaggagccaagca 100
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactcgcgtagctgccaa 44
|||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcgcttagctgccaa 37
>54941_zma-miR160d:pmrd
Length = 142
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 101 ttggctctactgcggatggcgtgcgaggagccaagcatgacc 142
||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 87 ttggctccactgcggatggcgtgcgtggagccaagcatgacc 128
Score = 65.9 bits (33), Expect = 8e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 4 gatatgcctggctccctgtatgccactcgcgtagctgccaa 44
|||||||||||||||||||||||||||||| | ||||||||
Sbjct: 17 gatatgcctggctccctgtatgccactcgcatggctgccaa 57
>48830_osa-miR160e:pmrd
Length = 114
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1 ggggatatgcctggctccctgtatgccactcgcgtagctgccaa 44
||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 4 ggggatatgcctggctccctgtatgccgctcgcatggctgccaa 47
>54942_zma-miR160e:pmrd
Length = 94
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgccactcgc 33
|||||||||||||||||||||||||||||
Sbjct: 6 atatgcctggctccctgtatgccactcgc 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 110 ctgcggatggcgtgcgaggagccaagcatg 139
|||||| |||||||||||| ||||||||||
Sbjct: 59 ctgcggctggcgtgcgaggtgccaagcatg 88
>54946_zma-miR160i:pmrd
Length = 81
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 atgcctggctccctgtatgccactcgc 33
|||||||||||||||||||||||||||
Sbjct: 1 atgcctggctccctgtatgccactcgc 27
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 110 ctgcggatggcgtgcgaggagccaagcat 138
|||||| |||||||||||| |||||||||
Sbjct: 53 ctgcggctggcgtgcgaggtgccaagcat 81
>48658_hvv-miR160a:pmrd
Length = 344
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 2 gggatatgcctggctccctgtatgcca 28
|||||||||||||||||||||||||||
Sbjct: 318 gggatatgcctggctccctgtatgcca 344
>54408_sbi-miR160e:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactcgc 33
||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcgc 26
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 110 ctgcggatggcgtgcgaggagccaagca 137
|||||| |||||||||||| ||||||||
Sbjct: 68 ctgcggctggcgtgcgaggtgccaagca 95
>54943_zma-miR160f:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgccactcgc 33
||||||||||||||||||||||| |||||
Sbjct: 18 atatgcctggctccctgtatgccgctcgc 46
>54940_zma-miR160c:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 ggatatgcctggctccctgtatgccactc 31
|||| ||||||||||||||||||||||||
Sbjct: 2 ggatgtgcctggctccctgtatgccactc 30
>48791_oba-miR160:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 106 tctactgcggatggcgtgcgaggagccaagcat 138
||||| |||| ||||||||||||||||||||||
Sbjct: 56 tctacggcgggtggcgtgcgaggagccaagcat 88
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccact 30
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccact 26
>54783_vvi-miR160f:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgcca 28
||||||||||||||||||||||||
Sbjct: 8 atatgcctggctccctgtatgcca 31
>54781_vvi-miR160d:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 112 gcggatggcgtgcgaggagccaagcatg 139
|||||||||||||||||||||| |||||
Sbjct: 65 gcggatggcgtgcgaggagccatgcatg 92
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 atgcctggctccctgtatgcca 28
||||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcca 31
>54780_vvi-miR160c:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 111 tgcggatggcgtgcgaggagccaagcat 138
||||| ||||||||||||||||||||||
Sbjct: 68 tgcgggtggcgtgcgaggagccaagcat 95
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>54759_ttu-miR160a:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactc 31
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>54541_sly-miR160a:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgcca 28
||||||||||||||||||||||||
Sbjct: 17 atatgcctggctccctgtatgcca 40
>54406_sbi-miR160c:pmrd
Length = 83
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactc 31
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgccac 29
||||||||||||||||||||||||
Sbjct: 10 tatgcctggctccctgtatgccac 33
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tggcgtgcgaggagccaagcat 138
||||||||||||||||||||||
Sbjct: 76 tggcgtgcgaggagccaagcat 97
>51611_ptc-miR160d:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgccac 29
||||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgccac 32
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tggcgtgcgaggagccaagcat 138
||||||||||||||||||||||
Sbjct: 75 tggcgtgcgaggagccaagcat 96
>51608_ptc-miR160a:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgccac 29
||||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgccac 32
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tggcgtgcgaggagccaagcat 138
||||||||||||||||||||||
Sbjct: 74 tggcgtgcgaggagccaagcat 95
>48832_osa-miR160m:pmrd
Length = 82
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactc 31
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>48828_osa-miR160c:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactc 31
||||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccactc 30
>48827_osa-miR160b:pmrd
Length = 139
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactc 31
||||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccactc 53
>46936_ath-miR160c:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgccac 29
||||||||||||||||||||||||
Sbjct: 3 tatgcctggctccctgtatgccac 26
>51363_ppt-miR160e:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccact 30
|||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccact 52
>48397_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgcca 28
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgcca 28
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgcca 28
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgcca 28
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>54947_zma-miR160m:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54944_zma-miR160g:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54939_zma-miR160b:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccac 42
>54938_zma-miR160a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgccac 31
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>54405_sbi-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54404_sbi-miR160a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51334_pga-miR160:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48826_osa-miR160a:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>46935_ath-miR160b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgcca 28
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51610_ptc-miR160c:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgcca 28
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgcca 28
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 gcctggctccctgtatgccac 29
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48704_mtr-miR160e:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgcca 28
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgcca 28
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgcca 28
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48635_gra-miR160b:pmrd
Length = 293
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 atgcctggctccctgtatgcc 27
|||||||||||||||||||||
Sbjct: 272 atgcctggctccctgtatgcc 292
>48634_gra-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 atgcctggctccctgtatgcc 27
|||||||||||||||||||||
Sbjct: 85 atgcctggctccctgtatgcc 105
>48542_gma-miR160a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgcca 28
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>48306_bdi-miR160:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 atgcctggctccctgtatgcc 27
|||||||||||||||||||||
Sbjct: 17 atgcctggctccctgtatgcc 37
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgcca 28
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 ggatggcgtgcgaggagccaagcat 138
|||||||||||||||||||| ||||
Sbjct: 57 ggatggcgtgcgaggagccatgcat 81
