miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48831_osa-miR160f:pmrd
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 ggattaacgctgcctggctccctgaatgccatccgagaagcgtgccgctgtggccggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggattaacgctgcctggctccctgaatgccatccgagaagcgtgccgctgtggccggctg 60
Query: 61 cttcctggttggcattgagggagtcatgcagggtttgctc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttcctggttggcattgagggagtcatgcagggtttgctc 100
>50560_osa-miRf11345-akr:pmrd
Length = 78
Score = 155 bits (78), Expect = 7e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgaatgccatccgagaagcgtgccgctgtggccggctgcttcctggttg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctggctccctgaatgccatccgagaagcgtgccgctgtggccggctgcttcctggttg 60
Query: 72 gcattgagggagtcatgc 89
||||||||||||||||||
Sbjct: 61 gcattgagggagtcatgc 78
>54409_sbi-miR160f:pmrd
Length = 110
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatccgaga 38
||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgaatgccatccgaga 28
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 ggttggcattgagggagtcatgcagg 92
||||||| ||||||||||||||||||
Sbjct: 63 ggttggcgttgagggagtcatgcagg 88
>54782_vvi-miR160e:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
>54779_vvi-miR160b:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
>54778_vvi-miR160a:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
>51613_ptc-miR160f:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
>51612_ptc-miR160e:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
>54575_smo-miR160b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatccgagaagc 41
||||||||||||||| |||||| | |||||||
Sbjct: 12 ctgcctggctccctgtatgccacctgagaagc 43
>54574_smo-miR160a:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||| ||||||||
Sbjct: 10 ctgcctggctccctgtatgccatc 33
>48397_bra-miR160a:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatcc 34
|||||||||||||| |||||||||
Sbjct: 26 tgcctggctccctgtatgccatcc 49
>48396_bra-miR160a:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatcc 34
|||||||||||||| |||||||||
Sbjct: 26 tgcctggctccctgtatgccatcc 49
