miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48834_osa-miR162a:pmrd
Length = 171
Score = 285 bits (144), Expect = 5e-78
Identities = 162/171 (94%)
Strand = Plus / Plus
Query: 1 ggtgatgcctgggcgcagtggtttatcgatcccttccctgccttgtggcgctgatccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgatgcctgggcgcagtggtttatcgatcccttccctgccttgtggcgctgatccagg 60
Query: 61 agcggcgaatttctttgagagggtgttcnnnnnnnnncttccttttggtccttgttgcag 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 agcggcgaatttctttgagagggtgttctttttttttcttccttttggtccttgttgcag 120
Query: 121 ccaacgacaacgcgggaatcgatcgataaacctctgcatccagttctcgcc 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccaacgacaacgcgggaatcgatcgataaacctctgcatccagttctcgcc 171
>48835_osa-miR162b:pmrd
Length = 134
Score = 85.7 bits (43), Expect = 1e-17
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 1 ggtgatgcctgggcgcagtggtttatcgatcccttccctgccttgtg 47
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3 ggtgatgcctgggcgcagtggtttatcgatctcttccctgccttgtg 49
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 127 acaacgcgggaatcgatcgataaacctctgcatccagttctc 168
||||||| ||||||||||||||| ||||||||||||| ||||
Sbjct: 88 acaacgcaggaatcgatcgataagcctctgcatccagatctc 129
>48836_osa-miR162m:pmrd
Length = 114
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 9 ctgggcgcagtggtttatcgatcccttccctgccttgtg 47
||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctgggcgcagtggtttatcgatctcttccctgccttgtg 39
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 127 acaacgcgggaatcgatcgataaacctctgcatccag 163
||||||| ||||||||||||||| |||||||||||||
Sbjct: 78 acaacgcaggaatcgatcgataagcctctgcatccag 114
>54948_zma-miR162b:pmrd
Length = 130
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 127 acaacgcgggaatcgatcgataaacctctgcatccag 163
||||||||||||||| |||||||||||||||||||||
Sbjct: 94 acaacgcgggaatcggtcgataaacctctgcatccag 130
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 9 ctgggcgcagtggtttatcgatcccttccctgccttgtg 47
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1 ctgggcgcagtggtttatcgatctcttccttgccttgtg 39
>54387_rco-miR162:pmrd
Length = 96
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatccag 163
||||||||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccag 95
>48682_llu-miR162:pmrd
Length = 80
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatccag 163
||||||||||||||||||||||||||||
Sbjct: 53 gaatcgatcgataaacctctgcatccag 80
>48545_gma-miR162a:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatccag 163
||||||||||||||||||||||||||||
Sbjct: 66 gaatcgatcgataaacctctgcatccag 93
>48493_ghr-miR162a:pmrd
Length = 148
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatccag 163
||||||||||||||||||||||||||||
Sbjct: 87 gaatcgatcgataaacctctgcatccag 114
>48423_cpa-miR162a:pmrd
Length = 109
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatccag 163
||||||||||||||||||||||||||||
Sbjct: 73 gaatcgatcgataaacctctgcatccag 100
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 136 gaatcgatcgataaacctctgcatccag 163
||||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccag 15
>46938_ath-miR162b:pmrd
Length = 111
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatccag 163
||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccag 99
>54542_sly-miR162:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 135 ggaatcgatcgataaacctctgcatccag 163
||||||| |||||||||||||||||||||
Sbjct: 71 ggaatcggtcgataaacctctgcatccag 99
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 140 cgatcgataaacctctgcatccagt 164
|||||||||||||||||||||||||
Sbjct: 30 cgatcgataaacctctgcatccagt 6
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 140 cgatcgataaacctctgcatccagt 164
|||||||||||||||||||||||||
Sbjct: 32 cgatcgataaacctctgcatccagt 8
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 140 cgatcgataaacctctgcatccagt 164
|||||||||||||||||||||||||
Sbjct: 32 cgatcgataaacctctgcatccagt 8
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 140 cgatcgataaacctctgcatccagt 164
|||||||||||||||||||||||||
Sbjct: 30 cgatcgataaacctctgcatccagt 6
>51618_ptc-miR162c:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 140 cgatcgataaacctctgcatccagt 164
|||||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccagt 99
>51617_ptc-miR162b:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 140 cgatcgataaacctctgcatccagt 164
|||||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccagt 99
>54784_vvi-miR162:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatccag 163
|||||| |||||||||||||||||||||
Sbjct: 66 gaatcggtcgataaacctctgcatccag 93
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 140 cgatcgataaacctctgcatccag 163
||||||||||||||||||||||||
Sbjct: 31 cgatcgataaacctctgcatccag 8
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 140 cgatcgataaacctctgcatccag 163
||||||||||||||||||||||||
Sbjct: 31 cgatcgataaacctctgcatccag 8
>51616_ptc-miR162a:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 140 cgatcgataaacctctgcatccag 163
||||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccag 98
>48707_mtr-miR162d:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatccag 163
|||||| |||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
>46937_ath-miR162a:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatccag 163
|||| |||||||||||||||||||||||
Sbjct: 82 gaatagatcgataaacctctgcatccag 109
>48706_mtr-miR162c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 136 gaatcgatcgataaacctctgcatcca 162
|||||| ||||||||||||||||||||
Sbjct: 27 gaatcggtcgataaacctctgcatcca 1
>48705_mtr-miR162b:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatcca 162
|||||| ||||||||||||||||||||
Sbjct: 59 gaatcggtcgataaacctctgcatcca 85
>48685_lsa-miR162:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 143 tcgataaacctctgcatccag 163
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48546_gma-miR162m:pmrd
Length = 367
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 143 tcgataaacctctgcatccag 163
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48690_mdo-miR162:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 136 gaatcgatcgataaacctctgcatccag 163
|||||| ||||||||||| |||||||||
Sbjct: 61 gaatcggtcgataaacctttgcatccag 88
