miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48835_osa-miR162b:pmrd
Length = 134
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1 tgggtgatgcctgggcgcagtggtttatcgatctcttccctgccttgtgctgctccgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgggtgatgcctgggcgcagtggtttatcgatctcttccctgccttgtgctgctccgatc 60
Query: 61 gatgcccgtgctgattcttgataatatacaacgcaggaatcgatcgataagcctctgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgcccgtgctgattcttgataatatacaacgcaggaatcgatcgataagcctctgcat 120
Query: 121 ccagatctcacttt 134
||||||||||||||
Sbjct: 121 ccagatctcacttt 134
>48836_osa-miR162m:pmrd
Length = 114
Score = 226 bits (114), Expect = 3e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 11 ctgggcgcagtggtttatcgatctcttccctgccttgtgctgctccgatcgatgcccgtg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggcgcagtggtttatcgatctcttccctgccttgtgctgctccgatcgatgcccgtg 60
Query: 71 ctgattcttgataatatacaacgcaggaatcgatcgataagcctctgcatccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgattcttgataatatacaacgcaggaatcgatcgataagcctctgcatccag 114
>48834_osa-miR162a:pmrd
Length = 171
Score = 85.7 bits (43), Expect = 8e-18
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 3 ggtgatgcctgggcgcagtggtttatcgatctcttccctgccttgtg 49
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ggtgatgcctgggcgcagtggtttatcgatcccttccctgccttgtg 47
Score = 60.0 bits (30), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 88 acaacgcaggaatcgatcgataagcctctgcatccagatctc 129
||||||| ||||||||||||||| ||||||||||||| ||||
Sbjct: 127 acaacgcgggaatcgatcgataaacctctgcatccagttctc 168
>54948_zma-miR162b:pmrd
Length = 130
Score = 77.8 bits (39), Expect = 2e-15
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 11 ctgggcgcagtggtttatcgatctcttccctgccttgtgctgctccg 57
||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 1 ctgggcgcagtggtttatcgatctcttccttgccttgtgctggtccg 47
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 88 acaacgcaggaatcgatcgataagcctctgcatccag 124
||||||| ||||||| ||||||| |||||||||||||
Sbjct: 94 acaacgcgggaatcggtcgataaacctctgcatccag 130
>54387_rco-miR162:pmrd
Length = 96
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 90 aacgcaggaatcgatcgataagcctctgcatccag 124
|||||| |||||||||||||| |||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatccag 95
>48682_llu-miR162:pmrd
Length = 80
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 97 gaatcgatcgataagcctctgcatccag 124
|||||||||||||| |||||||||||||
Sbjct: 53 gaatcgatcgataaacctctgcatccag 80
>48545_gma-miR162a:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 97 gaatcgatcgataagcctctgcatccag 124
|||||||||||||| |||||||||||||
Sbjct: 66 gaatcgatcgataaacctctgcatccag 93
>48493_ghr-miR162a:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 97 gaatcgatcgataagcctctgcatccag 124
|||||||||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataaacctctgcatccag 114
>48423_cpa-miR162a:pmrd
Length = 109
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 97 gaatcgatcgataagcctctgcatccag 124
|||||||||||||| |||||||||||||
Sbjct: 73 gaatcgatcgataaacctctgcatccag 100
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 97 gaatcgatcgataagcctctgcatccag 124
|||||||||||||| |||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccag 15
>46938_ath-miR162b:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 97 gaatcgatcgataagcctctgcatccag 124
|||||||||||||| |||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccag 99
>54542_sly-miR162:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 95 aggaatcgatcgataagcctctgcatccag 124
|||||||| ||||||| |||||||||||||
Sbjct: 70 aggaatcggtcgataaacctctgcatccag 99
>54784_vvi-miR162:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 97 gaatcgatcgataagcctctgcatccag 124
|||||| ||||||| |||||||||||||
Sbjct: 66 gaatcggtcgataaacctctgcatccag 93
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 cgatcgataagcctctgcatccag 124
|||||||||| |||||||||||||
Sbjct: 30 cgatcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 cgatcgataagcctctgcatccag 124
|||||||||| |||||||||||||
Sbjct: 32 cgatcgataaacctctgcatccag 9
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 cgatcgataagcctctgcatccag 124
|||||||||| |||||||||||||
Sbjct: 31 cgatcgataaacctctgcatccag 8
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 cgatcgataagcctctgcatccag 124
|||||||||| |||||||||||||
Sbjct: 31 cgatcgataaacctctgcatccag 8
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 cgatcgataagcctctgcatccag 124
|||||||||| |||||||||||||
Sbjct: 32 cgatcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 cgatcgataagcctctgcatccag 124
|||||||||| |||||||||||||
Sbjct: 30 cgatcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 101 cgatcgataagcctctgcatccag 124
|||||||||| |||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 101 cgatcgataagcctctgcatccag 124
|||||||||| |||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccag 98
>51616_ptc-miR162a:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 101 cgatcgataagcctctgcatccag 124
|||||||||| |||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccag 98
>48707_mtr-miR162d:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 97 gaatcgatcgataagcctctgcatccag 124
|||||| ||||||| |||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
>46937_ath-miR162a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 97 gaatcgatcgataagcctctgcatccag 124
|||| ||||||||| |||||||||||||
Sbjct: 82 gaatagatcgataaacctctgcatccag 109
