miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48840_osa-miR164c:pmrd
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 aggttcttgttggagaagcagggtacgtgcaaaatgcacaccggttggtcgagctaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggttcttgttggagaagcagggtacgtgcaaaatgcacaccggttggtcgagctaatta 60
Query: 61 acaagctctgacgaccatggtgatcgaatgcacgtgctccccttctccaccatggcctt 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acaagctctgacgaccatggtgatcgaatgcacgtgctccccttctccaccatggcctt 119
>54414_sbi-miR164e:pmrd
Length = 205
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccat 113
|||||||||||||||||||||||||
Sbjct: 181 tgcacgtgctccccttctccaccat 205
>48708_mtr-miR164a:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggtacgtgcaaa 33
|||||||||||||||||| |||||||||
Sbjct: 1 cttgttggagaagcagggcacgtgcaaa 28
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctcca 109
|||||||||||||||||||||
Sbjct: 73 tgcacgtgctccccttctcca 93
>54788_vvi-miR164d:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 86 tgcacgtgctccccttctccaacatgg 112
>54785_vvi-miR164a:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 89 tgcacgtgctccccttctccaacatgg 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggtacgtgca 31
|||||||||||||||||| |||||||
Sbjct: 6 cttgttggagaagcagggcacgtgca 31
>51621_ptc-miR164c:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 54 tgcacgtgctccccttctccaacatgg 80
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 tcttgttggagaagcagggtacgtgcaa 32
||||| ||||||||||||| ||||||||
Sbjct: 5 tcttgctggagaagcagggcacgtgcaa 32
>48710_mtr-miR164c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggtacgtgcaa 32
|||||||||||||||||| ||||||||
Sbjct: 1 cttgttggagaagcagggcacgtgcaa 27
>48547_gma-miR164:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggtacgtgcaa 32
|||||||||||||||||| ||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgcaa 32
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctcca 109
|||||||||||||||||||||
Sbjct: 65 tgcacgtgctccccttctcca 85
>48419_cav-miR164:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggtacgtgcaa 32
|||||||||||||||||| ||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgcaa 32
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 65 tgcacgtgctccccttctccaacatgg 91
>51862_ptc-miRf10040-akr:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 cttgttggagaagcagggtacgtgcaaaat 35
|||| ||||||||||||| |||||||||||
Sbjct: 82 cttgctggagaagcagggcacgtgcaaaat 53
>51619_ptc-miR164a:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggtacgtgcaaaat 35
|||| ||||||||||||| |||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgcaaaat 35
>47540_ath-miRf10440-akr:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 8 tgttggagaagcagggtacgtgcaaa 33
|||||||||||||||| |||||||||
Sbjct: 98 tgttggagaagcagggcacgtgcaaa 73
>47539_ath-miRf10439-akr:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 8 tgttggagaagcagggtacgtgcaaa 33
|||||||||||||||| |||||||||
Sbjct: 99 tgttggagaagcagggcacgtgcaaa 74
>46940_ath-miR164a:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 tgttggagaagcagggtacgtgcaaa 33
|||||||||||||||| |||||||||
Sbjct: 16 tgttggagaagcagggcacgtgcaaa 41
>51622_ptc-miR164d:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tggagaagcagggtacgtgcaaaat 35
||||||||||||| |||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaaaat 35
>48398_bra-miR164a:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 gttggagaagcagggtacgtgcaaa 33
||||||||||||||| |||||||||
Sbjct: 8 gttggagaagcagggcacgtgcaaa 32
>48341_bna-miR164:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 gttggagaagcagggtacgtgcaaa 33
||||||||||||||| |||||||||
Sbjct: 5 gttggagaagcagggcacgtgcaaa 29
