miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48842_osa-miR164e:pmrd
Length = 132
Score = 262 bits (132), Expect = 6e-71
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcagggtggagaagcagggcacgtgagcggccatccagtgtagcttcgctgcgcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtgcagggtggagaagcagggcacgtgagcggccatccagtgtagcttcgctgcgcgt 60
Query: 61 ccatggcggcgaacgcgcgtgatctggagtttggatggtcgttcatgtgtccgtcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccatggcggcgaacgcgcgtgatctggagtttggatggtcgttcatgtgtccgtcttctc 120
Query: 121 caccgagcactg 132
||||||||||||
Sbjct: 121 caccgagcactg 132
>54412_sbi-miR164c:pmrd
Length = 153
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 1 ttgtgcagggtggagaagcagggcacgtgagcggccatccagt 43
|||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 11 ttgtgcagggtggagaagcaggacacgtgagcgaccatccagt 53
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 91 ttggatggtcgttcatgtgtccgtcttctccaccgagcac 130
|||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 103 ttgggtggtcgctcatgtgtccgtcctctccaccgagcac 142
>48839_osa-miR164b:pmrd
Length = 109
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 92 tggatggtcgttcatgtgtccgtcttctccaccgagcac 130
|||||||| |||||||| ||||||||||||||||||||
Sbjct: 71 tggatggttcttcatgtgcccgtcttctccaccgagcac 109
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 gtgcagggtggagaagcagggcacgtg 29
||||| |||||||||||||||||||||
Sbjct: 1 gtgcacggtggagaagcagggcacgtg 27
>54956_zma-miR164h:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtggagaagcagggcacgtg 29
|||||||||||||||||||||
Sbjct: 2 ggtggagaagcagggcacgtg 22
>54953_zma-miR164e:pmrd
Length = 242
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtggagaagcagggcacgtg 29
|||||||||||||||||||||
Sbjct: 2 ggtggagaagcagggcacgtg 22
>54951_zma-miR164c:pmrd
Length = 270
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtggagaagcagggcacgtg 29
|||||||||||||||||||||
Sbjct: 16 ggtggagaagcagggcacgtg 36
>54950_zma-miR164b:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtggagaagcagggcacgtg 29
|||||||||||||||||||||
Sbjct: 19 ggtggagaagcagggcacgtg 39
>48843_osa-miR164f:pmrd
Length = 210
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtggagaagcagggcacgtg 29
|||||||||||||||||||||
Sbjct: 22 ggtggagaagcagggcacgtg 42
