miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48848_osa-miR166e:pmrd
Length = 137
Score = 272 bits (137), Expect = 6e-74
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 1 tgtttctgggtggaatgttgtctggttcaaggccccttaggatgtgtgatttttgatggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtttctgggtggaatgttgtctggttcaaggccccttaggatgtgtgatttttgatggt 60
Query: 61 ttatgcattcatcttgatgcgaacatctatctcggatctttgggttctcgaaccaggctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttatgcattcatcttgatgcgaacatctatctcggatctttgggttctcgaaccaggctt 120
Query: 121 cattcccctcagagata 137
|||||||||||||||||
Sbjct: 121 cattcccctcagagata 137
>48844_osa-miR166a:pmrd
Length = 145
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 101 tgggttctcgaaccaggcttcattcccctcagagata 137
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 103 tgggatctcggaccaggcttcattcccctcagagata 139
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 ttctgggtggaatgttgtctggttcaagg 32
||||| |||||||||||||||||||||||
Sbjct: 14 ttctgagtggaatgttgtctggttcaagg 42
>54960_zma-miR166d:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 gtggaatgttgtctggttcaagg 32
|||||||||||||||||||||||
Sbjct: 1 gtggaatgttgtctggttcaagg 23
>54958_zma-miR166b:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 gtggaatgttgtctggttcaagg 32
|||||||||||||||||||||||
Sbjct: 1 gtggaatgttgtctggttcaagg 23
>54577_smo-miR166b:pmrd
Length = 136
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctcag 132
||||| |||||||||||||||||||||
Sbjct: 97 tctcggaccaggcttcattcccctcag 123
>54416_sbi-miR166a:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 gtggaatgttgtctggttcaagg 32
|||||||||||||||||||||||
Sbjct: 1 gtggaatgttgtctggttcaagg 23
>46951_ath-miR166g:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 105 ttctcgaaccaggcttcattcccctca 131
|||||| ||||||||||||||||||||
Sbjct: 82 ttctcggaccaggcttcattcccctca 108
>54972_zma-miR166p:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 69 tctcggaccaggcttcattcccctca 94
>54576_smo-miR166a:pmrd
Length = 145
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 106 tctcggaccaggcttcattcccctca 131
>51637_ptc-miR166m:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 74 tctcggaccaggcttcattcccctca 99
>51373_ppt-miR166f:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 107 ctcgaaccaggcttcattcccctcag 132
|||| |||||||||||||||||||||
Sbjct: 73 ctcggaccaggcttcattcccctcag 98
>48849_osa-miR166f:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 70 tctcggaccaggcttcattcccctca 95
>48847_osa-miR166d:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 89 tctcggaccaggcttcattcccctca 114
>54973_zma-miR166q:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctc 130
||||| |||||||||||||||||||
Sbjct: 67 tctcggaccaggcttcattcccctc 91
>54970_zma-miR166n:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctc 130
||||| |||||||||||||||||||
Sbjct: 72 tctcggaccaggcttcattcccctc 96
>54792_vvi-miR166d:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 107 ctcgaaccaggcttcattcccctca 131
|||| ||||||||||||||||||||
Sbjct: 128 ctcggaccaggcttcattcccctca 152
>54578_smo-miR166c:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctcag 132
|||||||||||||||||||||
Sbjct: 111 accaggcttcattcccctcag 131
>54425_sbi-miR166j:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 gtggaatgttgtctggttcaaggcc 34
||||||||||||||||||| |||||
Sbjct: 2 gtggaatgttgtctggttctaggcc 26
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 107 ctcgaaccaggcttcattcccctca 131
|||| ||||||||||||||||||||
Sbjct: 84 ctcggaccaggcttcattcccctca 108
>51636_ptc-miR166l:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 gaatgttgtctggttcaaggc 33
|||||||||||||||||||||
Sbjct: 14 gaatgttgtctggttcaaggc 34
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 107 ctcgaaccaggcttcattcccctca 131
|||| ||||||||||||||||||||
Sbjct: 67 ctcggaccaggcttcattcccctca 91
>51633_ptc-miR166i:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 107 ctcgaaccaggcttcattcccctca 131
|||| ||||||||||||||||||||
Sbjct: 73 ctcggaccaggcttcattcccctca 97
>51374_ppt-miR166g:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctcag 132
|||||||||||||||||||||
Sbjct: 100 accaggcttcattcccctcag 120
>51372_ppt-miR166e:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctcag 132
|||||||||||||||||||||
Sbjct: 100 accaggcttcattcccctcag 120
>51369_ppt-miR166b:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctcag 132
|||||||||||||||||||||
Sbjct: 78 accaggcttcattcccctcag 98
>51368_ppt-miR166a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctcag 132
|||||||||||||||||||||
Sbjct: 78 accaggcttcattcccctcag 98
>48550_gma-miR166n:pmrd
Length = 409
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctcag 132
|||||||||||||||||||||
Sbjct: 5 accaggcttcattcccctcag 25
>54795_vvi-miR166g:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 73 accaggcttcattcccctca 92
>54794_vvi-miR166f:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 73 accaggcttcattcccctca 92
>54543_sly-miR166a:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 90 accaggcttcattcccctca 109
>54379_pvu-miR166:pmrd
Length = 144
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 105 ttctcgaaccaggcttcattcccc 128
|||||| |||||||||||||||||
Sbjct: 111 ttctcggaccaggcttcattcccc 134
>51630_ptc-miR166f:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 80 accaggcttcattcccctca 99
>51628_ptc-miR166d:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 80 accaggcttcattcccctca 99
>51559_pta-miR166b:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 94 accaggcttcattcccctca 113
>48714_mtr-miR166d:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 105 ttctcgaaccaggcttcattcccc 128
|||||| |||||||||||||||||
Sbjct: 74 ttctcggaccaggcttcattcccc 97
>48549_gma-miR166b:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 105 ttctcgaaccaggcttcattcccc 128
|||||| |||||||||||||||||
Sbjct: 125 ttctcggaccaggcttcattcccc 148
>48345_bna-miR166d:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 105 ttctcgaaccaggcttcattcccc 128
|||||| |||||||||||||||||
Sbjct: 74 ttctcggaccaggcttcattcccc 97
>48344_bna-miR166c:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 97 accaggcttcattcccctca 116
>48343_bna-miR166b:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 95 accaggcttcattcccctca 114
>46950_ath-miR166f:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 82 accaggcttcattcccctca 101
>46949_ath-miR166e:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 123 accaggcttcattcccctca 142
>46948_ath-miR166d:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 105 ttctcgaaccaggcttcattcccc 128
|||||| |||||||||||||||||
Sbjct: 84 ttctcggaccaggcttcattcccc 107
>46947_ath-miR166c:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 105 ttctcgaaccaggcttcattcccc 128
|||||| |||||||||||||||||
Sbjct: 100 ttctcggaccaggcttcattcccc 123
>46870_aqc-miR166e:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 accaggcttcattcccctca 131
||||||||||||||||||||
Sbjct: 125 accaggcttcattcccctca 144
